RnoEX0040386 @ rn6
Exon Skipping
Gene
ENSRNOG00000031038 | Gtdc1
Description
glycosyltransferase-like domain containing 1 [Source:RGD Symbol;Acc:1563393]
Coordinates
chr3:29470963-29590206:-
Coord C1 exon
chr3:29590033-29590206
Coord A exon
chr3:29574023-29574156
Coord C2 exon
chr3:29470963-29471277
Length
134 bp
Sequences
Splice sites
3' ss Seq
TATAATCTCCTTTCCTTTAGGTG
3' ss Score
11.61
5' ss Seq
CAGGTGATA
5' ss Score
4.58
Exon sequences
Seq C1 exon
TTTGGTGGCTGATGTTGTGGTATTCAATTCCAATTTTAATATGGAATCATTTCTTACTTCTATTGGAAAATTCCTGAAGCTGATTCCTGATCACAGGCCTAAGGATCTGGAAAGCATTATCAGACCCAAGTGTCAAGTAATTTACTTTCCCATCAGATTTCCTGATGTGAGCAG
Seq A exon
GTGATGGAGGACATTTCGGTGAGGTATCTTTGCAAGATTCCCCCTGAGAAGAGCCTTGTTAATGAGCAGGTTTCCTTTTTCTGTTGGGTGGCATTACTTGGCTCCTTGATATTGATGGCTTCCAAGACTGTCAG
Seq C2 exon
ATTCATGCCCAAGCACAAAATAGCCCACTTAAGGAGGATGCTCAGCCTTATTGGAAATGATGCTGCAGCGCTGTCTGTGACGCTTCCTCCCCAACCAGAGCAGAGGCTTTCTAAGAAGTCACTGGAGAATTTTGAATCAAAGTCTGATGAACACCCTGGCCTTGATACTGAACAAGAAACCCTGGACACCCCAACAATCCTCAAATCAGTCTCCCTTCCTGTGAGCGAAGAAAACCCGGCTCTTGGTCACAGCACCTTTTTGTGTGGAGCTGAAGATCAGCAGAGACCGCTGCACATTACATGGCCGCACAGGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000031038_MULTIEX2-11/15=8-14
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.329
Domain overlap (PFAM):
C1:
PF120383=DUF3524=PD(3.2=3.4),PF120383=DUF3524=PD(96.2=86.4)
A:
NO
C2:
PF0053415=Glycos_transf_1=PU(7.8=11.3)
Main Inclusion Isoform:
ENSRNOT00000059679fB6301
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTGGTGGCTGATGTTGTGGT
R:
CGCTGCAGCATCATTTCCAAT
Band lengths:
244-378
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]