RnoEX0040395 @ rn6
Exon Skipping
Gene
ENSRNOG00000031038 | Gtdc1
Description
glycosyltransferase-like domain containing 1 [Source:RGD Symbol;Acc:1563393]
Coordinates
chr3:29590033-29597359:-
Coord C1 exon
chr3:29597192-29597359
Coord A exon
chr3:29592643-29592859
Coord C2 exon
chr3:29590033-29590206
Length
217 bp
Sequences
Splice sites
3' ss Seq
TACTTCATTTTATCTTGAAGTGG
3' ss Score
4.11
5' ss Seq
AATGTATGT
5' ss Score
5.87
Exon sequences
Seq C1 exon
GGTCCTCTTTGCAAGCTCAGTACTCAACCTGGCTGAACTGAGTGCACTTCGGCCTGATCTGGGAAAATTGAAGAAGATACTGTACTTCCATGAAAACCAGTTGGTATATCCTGTCAAGAAGTATCAGGAGAGGGATTTTCAATATGGATATAACCAAATTCTCTCATG
Seq A exon
TGGCAACTGGAAAATATGTTTTACAAATGAAAACAAGAGACTGGAGAGATGGCTCTGTGATTGTGAGCACTGACTGTTCTTCCAGAGGACCCAAGTCCAATTTCCAGCACCCACATGGAATCTCACACCTATCTGTAACTCCAATTCCAGTACTCTGACAACCTCACATGCTCATATACATAGGCAAAACATGGATGAGCATTAAAGAAGAAATAAT
Seq C2 exon
TTTGGTGGCTGATGTTGTGGTATTCAATTCCAATTTTAATATGGAATCATTTCTTACTTCTATTGGAAAATTCCTGAAGCTGATTCCTGATCACAGGCCTAAGGATCTGGAAAGCATTATCAGACCCAAGTGTCAAGTAATTTACTTTCCCATCAGATTTCCTGATGTGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000031038_MULTIEX2-7/15=6-8
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF120383=DUF3524=FE(33.5=100)
A:
PF120383=DUF3524=PD(14.3=40.0)
C2:
PF120383=DUF3524=PD(3.2=3.4),PF120383=DUF3524=PD(96.2=86.4)
Main Inclusion Isoform:
ENSRNOT00000059679fB6306
Main Skipping Isoform:
ENSRNOT00000059679fB6296
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTCCTCTTTGCAAGCTCAGT
R:
TGACACTTGGGTCTGATAATGCT
Band lengths:
303-520
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]