RnoEX0040605 @ rn6
Exon Skipping
Gene
ENSRNOG00000036831 | Gtsf1
Description
gametocyte specific factor 1 [Source:RGD Symbol;Acc:1310791]
Coordinates
chr7:145034467-145037257:-
Coord C1 exon
chr7:145037194-145037257
Coord A exon
chr7:145036208-145036243
Coord C2 exon
chr7:145034467-145034561
Length
36 bp
Sequences
Splice sites
3' ss Seq
TTTTTGGTTCTTTTTTTCAGAGC
3' ss Score
10.5
5' ss Seq
TAGGTAAGC
5' ss Score
8.89
Exon sequences
Seq C1 exon
ACTTGTGGGAACAGACTAGCACCCCTTTTGTCTGGGGCACAGCCAGTTTCTGTGGCAACAACAG
Seq A exon
AGCTGGGGACCGAACCCAGGGCCTTGCGCTTCCTAG
Seq C2 exon
TCCTGCAAACAACATAGTTATGGAACATAAGAGTAACCTTGCTTCAGGCATGCGAGTTCCCAAGTCTCTGCCCTATGTTCTACCATGGAAAAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000036831-'11-10,'11-9,12-10
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.538 C2=0.288
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSRNOT00000055275fB6337
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CTAGCACCCCTTTTGTCTGGG
R:
AGGGCAGAGACTTGGGAACTC
Band lengths:
123-159
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]