RnoEX0040758 @ rn6
Exon Skipping
Gene
ENSRNOG00000029860 | Gzmn
Description
granzyme N [Source:RGD Symbol;Acc:1597226]
Coordinates
chr15:35150851-35152102:-
Coord C1 exon
chr15:35151967-35152102
Coord A exon
chr15:35151494-35151754
Coord C2 exon
chr15:35150851-35151103
Length
261 bp
Sequences
Splice sites
3' ss Seq
TCCTCCCTCTTTCCTATCAGTTG
3' ss Score
9.79
5' ss Seq
AAGGTGGGG
5' ss Score
5.87
Exon sequences
Seq C1 exon
CTCAATGACAGTCATACTAGGGGCCCACAACCTCCATGAGCAGGAGAAAACTCAGCAGATCATCCCTGTGGAAAAAGCTATTCCCCACCTGGGCTATAATCCTCTGAACCACTCCAATGACATCATGCTATTAAAG
Seq A exon
TTGGAGAGTAAGGCCAAGAGGACTAAAGCTGTGAGGACCCTCAGGTTGCCTGGGCGCAAAGACCACGTAAATCCAGGGGATGTTTGTGGTGTGGCTGGCTGGGGAAAAACATCCATCAATGCCAATAAAGGATCTGCCCTGTTAGAGGAGGCTGAACTGATCATCCAGGGGGACGCGGAATGCAAAAAACGCTTCCGTCACTATTCCGAAACCACAGAGATTTGTGCTGGAGACCCAAACGAAATAGAGGCTCCTTCCAAG
Seq C2 exon
GGTGACTCGGGGGCACCCCTTGTGTGTGACAACAAAGCTTATGGAGTTTTGTCCTATGTAAAATCCAAGAAGATTTCTTCAGGGGTCTTCACCAAGGTTGTGTACTTCCTGCCGTGGATAAGCCAAAACACGGAGCTCCTCTAACAGGTTAACACCTGTGCCCAACCAGCCTGTCTGACCTCAGGCAAGAACCCCAATGAGTGTGCGTCAAAGGCTGAAAATCCATAATAAATAACCCCCAATGTGCAAGTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000029860_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.022 A=0.161 C2=0.043
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(20.4=100)
A:
PF0008921=Trypsin=FE(38.9=100)
C2:
PF0008921=Trypsin=PD(17.6=81.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGTCATACTAGGGGCCCAC
R:
TGGTTGGGCACAGGTGTTAAC
Band lengths:
297-558
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]