RnoEX0040782 @ rn6
Exon Skipping
Gene
ENSRNOG00000016659 | Habp2
Description
hyaluronan binding protein 2 [Source:RGD Symbol;Acc:1302979]
Coordinates
chr1:277102167-277104565:+
Coord C1 exon
chr1:277102167-277102468
Coord A exon
chr1:277103590-277103842
Coord C2 exon
chr1:277103942-277104565
Length
253 bp
Sequences
Splice sites
3' ss Seq
CTCTGCCTGACTCCCTATAGGTG
3' ss Score
10.62
5' ss Seq
AGGGTAGCT
5' ss Score
1.93
Exon sequences
Seq C1 exon
GGGAAGGCTCCCGCCAGCTCCTGGATGCTAAAGTCAAGCTGATTGCTAATGCTTTGTGCAACTCCCGCCAACTGTATGACCACACGATCGATGACAGTATGATCTGTGCAGGGAACCTGCAGAAGCCTGGATCGGACACCTGCCAGGTCAGAAACTCCACGTGGTGCTGGAGGTAGAGGCTCACTGAAGATCAAGCTGAGTGGAAAGGCCTATGATAGCACTGGGATGGGGACCGGGGTCAACAGGCCACCTGCTTCAGCCTTAAGACATAGGTGGGCATGCCCATCTGAGCCTACATCAAG
Seq A exon
GTGGGTCCATCCAAACAAACCATCACCTACCTTGGTCAGCTACTGAAAGACGTTGAGGAACCCCGGGAACTGAAAATTCTAGAAGGGAGAGTCAGGAAGCACTACTTGCCCACAGCACTGTGGATGCAGCCCTGGGCTCCCAGCTTTTTCCAAACTCAGGAACTGAAGCTGGGATTAGCTTCTCTCCCTTTGGAGCTGTGCATCATGGGAAACTTGAGAAGACCCTCGGCGCTGGTTTCCAGAGAAGCGCAGG
Seq C2 exon
GGTGACTCGGGGGGCCCTCTAACCTGTGAGAAGGATGGAACTTACTACGTCTATGGGATTGTAAGCTGGGGCCAGGAATGTGGGAAGAAGCCTGGAGTCTACACTCAAGTCACCAAGTTCCTGAATTGGATAAAAACCACCATGCACAAGGAGGCTGGCCTCTGAGGTGCTGTCTGCAGAGCCTCGAAGCACCTCCTCTTCTGCACTAAACAAGGGGGTGCTTCCTGTGTAGCCAAGGATATCCTGGGTCTATGCTTTAGACAGAGACATTGCTGACCAGCCTGGGTCTTTGCAGACTGGCACTACACCACCTCACGAGGCCCACTCTGTCCTCCTCTCCCTGAGAACCAACAAGAAATACATTACCTCTGCCCCGCTTCTGACAAGTGTGCCTTCGAGAAAACCAGAATTCAGAGATGCTCTCCACCATAAAGACCTGCAGATCTGAGATTTCTCCCTGTCCAGTACCAGAGGAGACTGTTACTCTTCTGCCCACACCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016659-'13-15,'13-14,14-15
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.027 A=0.035 C2=0.014
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(20.3=100)
A:
PF0008921=Trypsin=PD(0.1=0.0)
C2:
PF0008921=Trypsin=PD(18.1=78.2)
Main Inclusion Isoform:
ENSRNOT00000044183fB6371
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGATAGCACTGGGATGGGGAC
R:
GTGCAGAAGAGGAGGTGCTTC
Band lengths:
296-549
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]