RnoEX0041512 @ rn6
Exon Skipping
Gene
ENSRNOG00000003213 | Helz
Description
helicase with zinc finger [Source:RGD Symbol;Acc:1307049]
Coordinates
chr10:95834183-95841396:+
Coord C1 exon
chr10:95834183-95834450
Coord A exon
chr10:95835257-95835307
Coord C2 exon
chr10:95841063-95841396
Length
51 bp
Sequences
Splice sites
3' ss Seq
TTGCACCTCTCCATTTGTAGGTT
3' ss Score
10.54
5' ss Seq
AAAGTGAGT
5' ss Score
8.4
Exon sequences
Seq C1 exon
ATCTTGAGTACCTGATGCATGCCAAGCAGCAGCTGGTAACCACAGCCAGGCGCTGGGAGCCTTCCTCCAAGACTATTGTAGACTTTGAACCTAACGAGACTACTGATTGGGAGAAGAGCCTTTTGATCAGATACCAAATTCCTCTCTCTGCTGACCAGCTGTTTACACAGTCCGTTTTAGACAAATCCTTGACCAAGACTAACTATCAGTCACGGCTACACGACCTGCTTTATATTGAGGAGATAGCCCAGTATAAAGAAGTCAGCAG
Seq A exon
GTTAAATGGAATAGAACCTGTTAAAGTACCTATTTGTGTTCACTGTGCAAA
Seq C2 exon
GTTCAACCTTAAGGTGCAGCTGCAGATCTTAGCAAGCTTCATGCTCACTGGAGTTTCTGGGGGTGCAAAGTATGCTCAGAATGGACAACTTTTTGGTCGTTTTAAACTTACTGAAACCCTGTCTGAAGACACTTTGGCTGGACGACTGGTGATGACCAGGGTCAATGCTGTTTATTTATTACCAGTCCCTAAAGAGAAGCTCGTCCAGTCCCAGGGAACCAAAGAGAAGGTTTATGAAGCTACTATTGAAGAAAAAACAAAAGACTATGTATTTTTAAGGATATCCAGGGAATGCTGTGAAGAGCTCAGTCTGCGGCCTGACTGTGACACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003213_MULTIEX3-1/3=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.019 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSRNOT00000030300fB6469
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTATCAGTCACGGCTACACGA
R:
ACTTTGCACCCCCAGAAACTC
Band lengths:
138-189
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]