RnoEX0041766 @ rn6
Exon Skipping
Gene
ENSRNOG00000016967 | Hfe
Description
homeostatic iron regulator [Source:RGD Symbol;Acc:2793]
Coordinates
chr17:43667317-43669985:+
Coord C1 exon
chr17:43667317-43667427
Coord A exon
chr17:43668015-43668055
Coord C2 exon
chr17:43668780-43669985
Length
41 bp
Sequences
Splice sites
3' ss Seq
CCCTCTCTGGGTATCTGCAGCAT
3' ss Score
7.89
5' ss Seq
TAGGTCCGT
5' ss Score
2.63
Exon sequences
Seq C1 exon
AGCCCTCACGGTCTCAGGACATGATTATTGGAATCATAAGTGGGATCACCATTTGTGCCATCTTCTTTGTTGGAATTCTGATCCTAGTCTTAAGGAAAAGGAAGGTTTCAG
Seq A exon
CATGGATAAAACACAAGGGAGAAAGCAGTGAGCCAACATAG
Seq C2 exon
GAGGAACCATGGGTGACTATGTCTTAACAGAGTGTGAGTGACCTGCAGCATGCAGAAGCACAGAAGAGAGAAGACTCAGCCAAAGACTTGGAGGGGACACACTTGCTCCATTCTAGAACACAGCTGGACCTAACACACAGAAACTGCCTGAGGACTCTGCCCTTAGCTTTCCTGTTTGCTTTCTTAAGGTGTTTTCTCCAGTTAAGTTCAGTTCCTGAATAATAGTGACTGCCCCAGCTGCAACCTCTCCCTTCAGAACCAGTCTCATGATCTTTAAGCTGCTACTTGCAGGCATCCTTCGTTTTCTGCATCCACCTAGACTTCGTATGTCTACTTAAAAAGCCCCACTAAATTTGGGGGACACATGATTCATTTCCACATCTGAAGAAGTTATGAACCTTCATCCTGGGATGCACACATTCTTGTGCCAGAATTTTTCATACATATCCTAGGACCCATTCAATTGTCATTTGAGCCTCTCTATCTGTTAGTGACTACTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016967-'6-9,'6-8,7-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.385 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSRNOT00000022881fB6509
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCACGGTCTCAGGACATGA
R:
AGACATAGTCACCCATGGTTCCT
Band lengths:
132-173
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]