RnoEX0042246 @ rn6
Exon Skipping
Gene
ENSRNOG00000052968 | Hnrnpa3
Description
heterogeneous nuclear ribonucleoprotein A3 [Source:RGD Symbol;Acc:727807]
Coordinates
chr3:62484786-62485869:+
Coord C1 exon
chr3:62484786-62484881
Coord A exon
chr3:62485010-62485024
Coord C2 exon
chr3:62485726-62485869
Length
15 bp
Sequences
Splice sites
3' ss Seq
TGGAGGTGGTGGCAGCAGAGGCA
3' ss Score
-15.04
5' ss Seq
GTGGTGATG
5' ss Score
-0.2
Exon sequences
Seq C1 exon
GTCGTGGAGGTGGATCTGGCAACTTTATGGGACGTGGAGGAAACTTTGGTGGCGGCGGAGGAAACTTTGGGCGTGGAGGAAACTTTGGTGGAAGAG
Seq A exon
GCAGTTATGGAGGTG
Seq C2 exon
GTGGCAACTATGGTGGTGGTCCTGGTTACAGTAGTAGAGGAGGTTATGGAGGTGGTGGACCAGGATATGGAAACCAAGGTGGTGGATATGGTGGTGGAGGAGGAGGATATGATGGTTACAATGAAGGAGGAAATTTTGGTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000052968-'19-12,'19-11,20-12
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.485 A=NA C2=0.469
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAACTTTGGGCGTGGAGGAA
R:
CCATATCCTGGTCCACCACCT
Band lengths:
106-121
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]