RnoEX0042247 @ rn6
Exon Skipping
Gene
ENSRNOG00000052968 | Hnrnpa3
Description
heterogeneous nuclear ribonucleoprotein A3 [Source:RGD Symbol;Acc:727807]
Coordinates
chr3:62484977-62487087:+
Coord C1 exon
chr3:62484977-62485057
Coord A exon
chr3:62485804-62485806
Coord C2 exon
chr3:62486965-62487087
Length
3 bp
Sequences
Splice sites
3' ss Seq
ACCAGGATATGGAAACCAAGGTG
3' ss Score
-5.04
5' ss Seq
GTGGTGGAT
5' ss Score
-3.8
Exon sequences
Seq C1 exon
GAGGCTATGGTGGTGGAGGTGGTGGCAGCAGAGGCAGTTATGGAGGTGGTGATGGTGGATATAATGGATTTGGAGGTGATG
Seq A exon
GTG
Seq C2 exon
GTAACTATGGTGGTGGTGGGAACTATAATGACTTTGGAAATTATAGTGGACAGCAACAATCTAATTATGGACCCATGAAGGGGGGCAGTTTTGGTGGAAGAAGCTCAGGCAGTCCCTATGGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000052968-MICROEX1
Average complexity
MIC-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.679 A=NA C2=0.738
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGCTATGGTGGTGGAGGT
R:
AGTTCCCACCACCACCATAGT
Band lengths:
105-108
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]