RnoEX0042386 @ rn6
Exon Skipping
Gene
ENSRNOG00000008365 | Hoxb2
Description
homeobox B2 [Source:RGD Symbol;Acc:2319509]
Coordinates
chr10:84200880-84202688:+
Coord C1 exon
chr10:84200880-84201267
Coord A exon
chr10:84201538-84201678
Coord C2 exon
chr10:84202009-84202688
Length
141 bp
Sequences
Splice sites
3' ss Seq
TTTCCCCATTTTCTGTGTAGAGG
3' ss Score
8.5
5' ss Seq
CAGGTTGAG
5' ss Score
1.68
Exon sequences
Seq C1 exon
ATGAATTTTGAATTTGAGAGGGAGATTGGGTTTATAAACAGCCAGCCATCGCTCGCCGAGTGTCTGACTTCCTTCCCCGCTGTCTTGGAGACATTTCAAACTTCATCAATCAAGGAGTCGACATTAATTCCTCCTCCTCCTCCTCCTCTGGAGCAAACCTTCCCCAGCCTCCAGCTCGGCGCCTCCACCCTTCAGAGACCAGGGAGCCAAAAGCCAGCCGGAGATGGGCCTGCTCTGCGGCCACCGCCGCCACTCCCCGTCGCCCCCCCAGCCCCCGAGTTCCCCTGGATGAAAGAGAAGAAATCCGCCAAGAAACCCAGCCAATCCGCCGCAACCCCTTCTCCAGCCGCCTCCTCGGTCCGGGCCTCCGGGGTCGGATCACCATCAG
Seq A exon
AGGAATGAAGTGTGCCTGGAATTGAATCTGGAGCCTGGAAAAGATGCGAGCCTTCTAGCTCTCCTAAACCTAGGGGAGAAGAGGGAATTCAAAACCTAGGAAGGAAAGGGTTGAAGAACAATCTGTGATCCCTCTCCCCAG
Seq C2 exon
ATGGTCCCGGACTGCCGGAGAGCGGCGGCAGCGGCTCCCGCAGACTGCGCACGGCCTATACCAACACGCAACTGCTGGAGCTGGAGAAGGAGTTCCACTTCAACAAGTACCTGTGCCGGCCGCGGCGGGTTGAGATCGCCGCCTTGCTGGACCTCACCGAAAGGCAGGTCAAAGTCTGGTTCCAGAACCGACGCATGAAACACAAGCGACAGACTCAGCATCGAGAACCGCCCGATGGAGAACCAGGCGGGCTGAGCGCCCAGGACGACGCGGGAGAGCCAGCCGAGGAGCCCACGGTCAGCCCCGGCGACGTGGCGTCACATCGGCTGAGGGAAGCCTGCTTTCTCCCAGCCGAGGCCGCACAGGGACCCCGGGGCGCACCGCCGCCGCTGCCTCCTGCCACTGCCCTGGAGAGTGTGGGTGCATCGAGCCCCGGCTGCACAATGCTCAGAGCCGGAGGCCTGCAGAGCGAGCCCCTGCCCGAAGACGCCTGCCCCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008365-'0-1,'0-0,1-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.731 A=1.000 C2=0.615
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0004624=Homeobox=WD(100=25.1)
Main Inclusion Isoform:
ENSRNOT00000011213fB6611
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAAGAAACCCAGCCAATCCG
R:
ACTTTGACCTGCCTTTCGGTG
Band lengths:
256-397
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]