RnoEX0042600 @ rn6
Exon Skipping
Gene
ENSRNOG00000002826 | Hsd17b7
Description
hydroxysteroid (17-beta) dehydrogenase 7 [Source:RGD Symbol;Acc:2837]
Coordinates
chr13:88299980-88304707:-
Coord C1 exon
chr13:88304615-88304707
Coord A exon
chr13:88303361-88303439
Coord C2 exon
chr13:88299980-88300174
Length
79 bp
Sequences
Splice sites
3' ss Seq
ACTGTCTTCTGTTGTTTCAGAAA
3' ss Score
10.25
5' ss Seq
GAGGTGTTT
5' ss Score
1.54
Exon sequences
Seq C1 exon
GTTTCAAAGATTAGACTACTTATACCTGAACGCCGGAATCATGCCTAACCCCCAGCTAAACCTCAAAGCGTTTTTCTGTGGTATCTTTTCAAG
Seq A exon
AAATGTGATTCATATGTTCTCCACAGCGGAAGGACTTTTGACCCAGAATGACAAGATTACTGCTGATGGGTTCCAGGAG
Seq C2 exon
ATTCGGGAACTGGAACCACTTCTCTGCCACAGTGACAACCCCTCTCAGCTCATCTGGACGTCTTCTCGAAATGCAAAGAAGTCTAACTTCAGTCTTGAGGACATCCAGCACGCCAAAGGCCAGGAACCTTACAGCTCTTCCAAATACGCTACTGACCTCCTGAATGTAGCTTTGAACAGGAATTTCAATCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002826-'3-5,'3-4,4-5
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0010620=adh_short=FE(25.4=100)
A:
PF0010620=adh_short=PD(10.7=33.3)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACGCCGGAATCATGCCTAA
R:
CGTGCTGGATGTCCTCAAGAC
Band lengths:
178-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]