RnoEX0042807 @ rn6
Exon Skipping
Gene
ENSRNOG00000006595 | Htr3a
Description
5-hydroxytryptamine receptor 3A [Source:RGD Symbol;Acc:61818]
Coordinates
chr8:53213929-53217282:-
Coord C1 exon
chr8:53217113-53217282
Coord A exon
chr8:53216235-53216401
Coord C2 exon
chr8:53213929-53214089
Length
167 bp
Sequences
Splice sites
3' ss Seq
GCCTGTTCTTTTTATTATAGGCT
3' ss Score
9.07
5' ss Seq
ACCGTGCGT
5' ss Score
7.22
Exon sequences
Seq C1 exon
TGTGGACGTGGGGAAGTCTCCAAGCATTCCTTATGTGTATGTGCACCATCAAGGTGAAGTCCAGAACTACAAGCCCCTACAGCTGGTGACCGCCTGTAGCCTTGACATCTATAACTTCCCGTTCGATGTGCAGAACTGCTCTCTGACCTTCACCAGCTGGCTGCATACCA
Seq A exon
GCTGTCTCCTCTCCTAGGCTACACACTTCTCCTCCTGCTTGCCGCACCCCAGCCACAGCCTGGTCAACAACTCCAGTCACCTGGTTATGCCACAGGGCTCATCAGCTCCTGGAAGGCCCTTCCATGGCTCCCTAAACTAGCTGTCTCCCAGGCAGCAGTTAAAAACC
Seq C2 exon
TCCAGGACATCAACATTTCCCTGTGGCGAACACCAGAAGAAGTGAGGTCGGACAAGAGCATCTTCATAAATCAGGGCGAGTGGGAGCTGCTGGGGGTGTTCACCAAATTTCAGGAGTTCAGTATAGAAACCAGTAACAGCTATGCGGAAATGAAGTTCTAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006595_MULTIEX1-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0293118=Neur_chan_LBD=FE(27.3=100)
A:
PF0293118=Neur_chan_LBD=PD(2.0=50.0)
C2:
PF0293118=Neur_chan_LBD=FE(25.4=100)
Main Inclusion Isoform:
ENSRNOT00000008965fB6684
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGGAAGTCTCCAAGCATTCC
R:
CCCACTCGCCCTGATTTATGA
Band lengths:
245-412
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]