RnoEX0043131 @ rn6
Exon Skipping
Gene
ENSRNOG00000015020 | Idh1
Description
isocitrate dehydrogenase (NADP(+)) 1, cytosolic [Source:RGD Symbol;Acc:2862]
Coordinates
chr9:71899909-71912120:-
Coord C1 exon
chr9:71911556-71912120
Coord A exon
chr9:71902258-71902306
Coord C2 exon
chr9:71899909-71900046
Length
49 bp
Sequences
Splice sites
3' ss Seq
TTTGTTTTCTGGAACTACAGAGA
3' ss Score
2.6
5' ss Seq
CAGGTAGCT
5' ss Score
6.52
Exon sequences
Seq C1 exon
GCCGAGCCTCGGCCGCAGAGTCCGCAGAGTCCCGGGCCTTCGCCATCCCTCAGGCGGTGCTCCGGGACCCACGCCGGCCTTCCTCCCACTGCGCGCCCTGCCTGCCCATGCCTCGCCGCCTCCCTTACCTTCGCCTCCCGCCCCGGCCCCGCGGGCCTCCCGCCTCCCCGGCCTCCGCCTCACCACTCTCGGCCAGGAAGCCTTAGCCAAGCGCAGGGCCGGCTTCCTCAGGCAGCCGGCGGTCGCGCCGAGGAGCCCAGAGGTATACGCTGTAACTGCGGTTTCTCGCTTCTGCCTACCACCTCAAGGCTCCGCCCCGATACCCCTTCTGACCAATCAGCAACAGGCTCCAAGGGCCGGCTCCGCCCACTCCTCACCGCCCTCTGGACCTTCCGATCAGATGTTCAGGCAGAAAGAATCTAACCCAGAGAATATCGTTCCAGGCCCCCAGAGGACTTAACGCTGCCTCAGCCTTCCTGAAAGAAGAGAGGACAGTGCAC
Seq A exon
AGACTGTCGGATTGGAAGCTGGCTGCCTTCACACTATGTAAATAAGCAG
Seq C2 exon
GGTTATTGAAGTAAAAATGTCCAGAAAAATCCATGGCGGTTCTGTGGTGGAAATGCAAGGAGATGAAATGACACGGATCATCTGGGAATTGATTAAAGAAAAGCTCATTCTTCCCTACGTGGAACTGGATCTGCATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015020_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0018015=Iso_dh=PU(8.1=78.0)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAATATCGTTCCAGGCCCCC
R:
TCCTTGCATTTCCACCACAGA
Band lengths:
133-182
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]