RnoEX0043539 @ rn6
Exon Skipping
Gene
ENSRNOG00000025990 | Igll1
Description
immunoglobulin lambda-like polypeptide 1 [Source:RGD Symbol;Acc:2321140]
Coordinates
chr11:88388378-88391370:+
Coord C1 exon
chr11:88388378-88388571
Coord A exon
chr11:88389637-88389752
Coord C2 exon
chr11:88391051-88391370
Length
116 bp
Sequences
Splice sites
3' ss Seq
GTGCCTACCTCACCCAACAGGTT
3' ss Score
8.57
5' ss Seq
TAGGTAAGC
5' ss Score
8.89
Exon sequences
Seq C1 exon
ATGAAGCTCAGGGCAGGACAGACACTGGGCACTATCCCCAGGCAATGTGAAATTCTCCTTCTGTTGCTGCTGTTGGGCCTGGTGGATGGTGTCCACCATATACTTTCCCCAAGCTCAGCACAAAGGGGCAGAGCTGTGGGCCCTGGAGCCTCAGTGGGAAGCAGCAGGTCTAGCCTGTGGACCCTTCCAGGCAG
Seq A exon
GTTCCTGTTCCAGATCATCCCACGGGGAGCAGGTCCCAGGTGCTGGCCCCATAGGCTTCCATCCAAGTCCCAGTTATGGTACGTCTTTGGTAGTGGGACCCAGCTCACAATCCTAG
Seq C2 exon
GGCAGCCCAAGTCTGACCCCTTGGTCACTCTGTTCCTGCCTTCCTTAAAGAATCTCCAGGTTAAGAAGGCGACACTAGTGTGTCTGGTGAGCGAATTCTACCCAGGTACTTTGGTGGTGGACTGGAAGGTAGATGGGATCCCTGTCACTCAGGGTGTGGAGACAACCCAACCCTCCAAACAGACCAACAACAAGTACGTGGCCAGCAGCTACCTGACACTGATGTCTGACCAATGGATGCCTCACAGTAGATACACCTGCCAGGTCACTCATGAAGGAAACACTGTGGAGAAGAGTGTGTCACCTGCTGAATGTTCTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025990-'0-2,'0-1,2-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.046 A=0.000 C2=0.151
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0765410=C1-set=WD(100=80.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTTCTGTTGCTGCTGTTGG
R:
CCTGGGTAGAATTCGCTCACC
Band lengths:
245-361
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]