RnoEX0046023 @ rn6
Exon Skipping
Gene
ENSRNOG00000009872 | Kcnh2
Description
potassium voltage-gated channel subfamily H member 2 [Source:RGD Symbol;Acc:621414]
Coordinates
chr4:7372045-7373980:+
Coord C1 exon
chr4:7372045-7372145
Coord A exon
chr4:7373417-7373562
Coord C2 exon
chr4:7373816-7373980
Length
146 bp
Sequences
Splice sites
3' ss Seq
GCTACCATTCCACTCTGTAGGTG
3' ss Score
5.7
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
Exon sequences
Seq C1 exon
GAGGCCGGAGGTCAGGGGACAAGAGCAGCTGCTAAAGGGACACCCAGGCAAAGCTCCTGAGCTCAGGGCCCTCAGGCAGGGGCAGGAGGGCCCTGGCTATG
Seq A exon
GTGAGGAAAAACGAGGCACAGGGATGTTGAACAGCTTTAGAACTGGGGCTGAAGCAGGAGATGCTGGACTAAAGGAGGGAAAAGTACAGGCACATTGAAACAATGGGAACATGGAGGAAGAAATGGTCACAAGCTGGAGAGAGAAG
Seq C2 exon
GGAGCTGCTTCCTGTGTTTGGTGGATGTGGTGCCCGTGAAGAATGAGGATGGGGCTGTCATCATGTTTATCCTCAACTTTGAAGTGGTGATGGAGAAGGACATGGTAGGGTCGCCAGCTCATGACACCAATCACAGGGGGCCCTCTACCAGCTGGCTAGCTTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009872-'6-5,'6-4,7-5
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.188 C2=0.286
Domain overlap (PFAM):
C1:
NA
A:
PF134261=PAS_9=PD(15.4=42.4)
C2:
PF134261=PAS_9=PD(29.0=55.4)
Main Inclusion Isoform:
ENSRNOT00000013800fB7187
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGTCAGGGGACAAGAGCAG
R:
CTAGCCAGCTGGTAGAGGGC
Band lengths:
253-399
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]