RnoEX0046082 @ rn6
Exon Skipping
Gene
ENSRNOG00000033796 | Kcnj5
Description
potassium voltage-gated channel subfamily J member 5 [Source:RGD Symbol;Acc:61971]
Coordinates
chr8:33441890-33463467:-
Coord C1 exon
chr8:33463237-33463467
Coord A exon
chr8:33452295-33452492
Coord C2 exon
chr8:33441890-33442828
Length
198 bp
Sequences
Splice sites
3' ss Seq
GCTGCTCTGTTCCCCTGTAGACC
3' ss Score
9.85
5' ss Seq
CGGGTAAGC
5' ss Score
9.14
Exon sequences
Seq C1 exon
CGGCTGCTCTCTCTAGATAGAAGGGCGAGGCAGACCGGTGAAGGGGCGGGAGGTTTACACGCCTCTGCTAGCTGGACCTGCGACACCAGAGTGGCTCAGGGCGGCTGTCGGTACGTAGGCAATGCCTGAGGCTATGGAATCCCCTGGAGAGCCCTGAGAGCCACACGCACCGCCTTGAAGGGATCGCCAGAAGTTAGCCCCAAGGGTTCAGAGAAGCTCTCTGCTCTACGA
Seq A exon
ACCCTCTCTGTGCAACAGCTCTGCTGACCCTCCCTCACCTCCTCAGCCACGCCAAGTGAAGAACTGAGCCTTGGATTTCACATCGTCGTTCCCTACAGAGCTCACCTGTTGGTCATTGTGTTCTCTGGGGTCTTGTGAGTTGGATGAAAGCAGGGAACAGAGCTGCAGTCTTCACTCACTTGCCTACCAGAGACCCGG
Seq C2 exon
CTATGGCCGGTGATTCTAGGAATGCTATGAATCAAGACATGGAGATAGGAGTCACCTCCCAGGACCACAAGAAGATCCCCAAACAGGCTCGGGATTACATCCCCATTGCCACAGACCGCACTCGCCTGCTGCCGGAAGGCAAGAAGCCACGCCAGCGCTACATGGAGAAGACCGGCAAGTGTAACGTGCACCATGGCAATGTTCAGGAAACCTACCGCTACCTAAGTGACCTCTTCACCACCCTGGTGGACCTCAAATGGCGCTTCAACCTTCTGGTCTTCACCATGGTCTACACCATTACTTGGCTATTCTTTGGCTTCATCTGGTGGCTCATTGCTTATGTCCGAGGTGATCTGGACCACGTGGGTGACCAAGAGTGGATCCCTTGTGTTGAAAACCTTAGTGGCTTTGTGTCTGCTTTCCTGTTCTCCATTGAGACAGAAACAACCATTGGGTATGGCTTCAGAGTCATTACAGAGAAGTGTCCAGAGGGGATCATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000033796_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.019
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0100715=IRK=PU(76.2=82.7)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTGAAGGGATCGCCAGAAG
R:
TACACTTGCCGGTCTTCTCCA
Band lengths:
242-440
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]