RnoEX0046085 @ rn6
Exon Skipping
Gene
ENSRNOG00000007645 | Kcnj9
Description
potassium voltage-gated channel subfamily J member 9 [Source:RGD Symbol;Acc:621440]
Coordinates
chr13:90706814-90710287:-
Coord C1 exon
chr13:90710035-90710287
Coord A exon
chr13:90708883-90708983
Coord C2 exon
chr13:90706814-90707691
Length
101 bp
Sequences
Splice sites
3' ss Seq
ATATGGTTCGTCTCTCTTAGGGG
3' ss Score
8.09
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
AGGGAGAGGGACGCTGTGGAGCTGTAGCCAGACTGGTTGCCATAGAAACGAGAGAGGAGCAGGGGAACCTGGGAAGTGGGGATGACACAGATACCAAGTCCTAGTCTGAGCTGCCGTTACATTCAGGAGAAACGGCAGTGTCTGCGGCTCCCACTCTCAGAGGGGACCTAGGGTATTGGGGGAGATGGTGTCAGGGACATGGACTCCAACCCCCAAGGGTCTCTGCTGCTGGCTACTCTCCTCTTCAGGCTCT
Seq A exon
GGGGCCGTGAGAGCCTAGGGAAGGACCCTGGACATCCCGTCTCTCCGGGAAGATTTTAACACAGAGTGCTTCTCAGGGGGAAGAATTCGAAGCAAAACCAG
Seq C2 exon
ACCCCGCAGGATCCCCGCTGCGGCCGCCATGGCGCAGGAGAACGCCGCTTTCTCTCCCGGGTCGGAGGAGCCACCGCGGCGCCGCGGTCGCCAGCGCTACGTGGAGAAGGACGGGCGCTGCAACGTGCAGCAGGGCAACGTCCGCGAGACCTACCGCTACCTGACCGACCTGTTCACCACGCTGGTAGATCTGCAGTGGCGCCTCAGCCTGCTCTTCTTCGTGCTCGCCTACGCGCTCACCTGGCTCTTCTTCGGCGCCATCTGGTGGCTCATCGCCTACGGCCGCGGCGACCTGGAGCACCTGGAGGACACCGCGTGGACACCGTGCGTCAACAACCTCAACGGCTTCGTGGCCGCCTTCCTCTTCTCCATCGAGACAGAAACCACCATCGGCTATGGGCACCGTGTCATCACCGACCAGTGCCCCGAGGGCATCGTGCTGCTGCTGTTGCAAGCCATCCTGGGCTCCATGGTGAACGCTTTCATGGTGGGCTGCATGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007645-'0-3,'0-0,1-3
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.053
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0100715=IRK=PU(76.9=91.2)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCTACTCTCCTCTTCAGGC
R:
CACGAAGAAGAGCAGGCTGAG
Band lengths:
247-348
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]