RnoEX0046399 @ rn6
Exon Skipping
Gene
ENSRNOG00000019145 | Kdm2a
Description
lysine demethylase 2A [Source:RGD Symbol;Acc:1309419]
Coordinates
chr1:219598365-219599930:-
Coord C1 exon
chr1:219599837-219599930
Coord A exon
chr1:219599334-219599367
Coord C2 exon
chr1:219598365-219598518
Length
34 bp
Sequences
Splice sites
3' ss Seq
GTTCTTTTTTTTTTCCGGAGCTG
3' ss Score
-1.54
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
Exon sequences
Seq C1 exon
GTACTGTCTAATGAGTGTTCGAGGCTGCTATACTGACTTCCATGTGGATTTTGGAGGTACTTCTGTTTGGTATCACATCCACCAAGGTGGAAAG
Seq A exon
CTGGGGACCGAACCCAGGGCCTTGCGCTTCCAAG
Seq C2 exon
GTCTTCTGGCTCATCCCCCCTACAGCCCACAACCTGGAGCTGTACGAGAATTGGCTGCTATCAGGGAAACAGGGAGACATCTTTCTGGGTGACCGGGTGTCAGATTGCCAACGAATTGAGCTCAAGCAGGGCTATACCTTCGTTATTCCCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019145-'15-12,'15-11,16-12
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.021
Domain overlap (PFAM):
C1:
PF0237317=JmjC=PU(29.7=93.8)
A:
NO
C2:
PF0237317=JmjC=FE(50.5=100)
Main Inclusion Isoform:
ENSRNOT00000054850fB7259
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAGGCTGCTATACTGACTTCC
R:
TCTCGTACAGCTCCAGGTTGT
Band lengths:
124-158
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]