RnoEX0046414 @ rn6
Exon Skipping
Gene
ENSRNOG00000019145 | Kdm2a
Description
lysine demethylase 2A [Source:RGD Symbol;Acc:1309419]
Coordinates
chr1:219578907-219581155:-
Coord C1 exon
chr1:219581072-219581155
Coord A exon
chr1:219580344-219580415
Coord C2 exon
chr1:219578907-219579176
Length
72 bp
Sequences
Splice sites
3' ss Seq
CTCTCCCCTTTTTGAAACAGGGT
3' ss Score
9.28
5' ss Seq
CAGGTAGAT
5' ss Score
7.25
Exon sequences
Seq C1 exon
ATTTTGCTGGAAGAACTTGCCAGTAGTGATCCCAAGTTAGCCCTCACTGGAGTTCCCATAGTACAGTGGCCAAAAAGGGATAAG
Seq A exon
GGTCTCATCAAGTTTACAGAGCTGTCCTTGAACTCATGACCTGCCTCTACCTCTAAAGTGCTAGGATTACAG
Seq C2 exon
CTTAAATTTCCGACCAGGCCAAAGGTGAGGGTTCCTACAATTCCCATCACAAAGCCTCACACCATGAAGCCGGCTCCGCGCCTAACACCTGTAAGGCCTGCTGCAGCCTCCCCCATTGTGTCAGGAGCCAGGCGGAGAAGAGTGCGCTGCAGGAAATGCAAAGCCTGTGTGCAAGGAGAATGTGGAGTCTGCCACTACTGCAGGGACATGAAGAAATTTGGTGGGCCTGGACGCATGAAGCAGTCCTGTGTCCTCAGACAGTGCTTAGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019145_MULTIEX1-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.333
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0200815=zf-CXXC=WD(100=52.2)
Main Inclusion Isoform:
ENSRNOT00000054850fB7263
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGCTGGAAGAACTTGCCAGT
R:
GCAGGCCTTACAGGTGTTAGG
Band lengths:
182-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]