RnoEX0046424 @ rn6
Exon Skipping
Gene
ENSRNOG00000025702 | Kdm2b
Description
lysine demethylase 2B [Source:RGD Symbol;Acc:1310217]
Coordinates
chr12:39084701-39090789:+
Coord C1 exon
chr12:39084701-39084816
Coord A exon
chr12:39085935-39086054
Coord C2 exon
chr12:39090663-39090789
Length
120 bp
Sequences
Splice sites
3' ss Seq
TCTTTCTTCACCCCTGACAGCCC
3' ss Score
7.88
5' ss Seq
AAGGTACAT
5' ss Score
7.87
Exon sequences
Seq C1 exon
GTTGGATCCATGCAGTGTACACGCCCGTGGACTCTCTGGTGTTCGGCGGGAACATCCTGCACAGCTTCAACGTGCCCATGCAGCTGCGCATCTACGAGATCGAGGACAGGACCCGG
Seq A exon
CCCCGATATAACCTTCCGTCTCGATGAAATTTGCCAGTTGGGGACATTTGCTAAGGACGGAATCATGTAATATGTGGCCTTTCATATCTGGACTCTTTCACTCAGCATGATGTGTTCAAG
Seq C2 exon
GTTCAGCCCAAGTTCCGTTACCCCTTCTACTATGAGATGTGCTGGTATGTCTTGGAGAGATACGTGTACTGTGTGACCCAGCGCTCCTACCTCACTCAGGAATACCAGCGAGAATTAATGCTCATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025702_MULTIEX1-1/3=C1-3
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.125 C2=0.023
Domain overlap (PFAM):
C1:
PF136211=Cupin_8=PD(34.6=71.8)
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSRNOT00000044071fB7265
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGGATCCATGCAGTGTACACG
R:
CAATGAGCATTAATTCTCGCTGGT
Band lengths:
242-362
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]