RnoEX0046706 @ rn6
Exon Skipping
Gene
ENSRNOG00000023176 | Kidins220
Description
kinase D-interacting substrate 220 [Source:RGD Symbol;Acc:619949]
Coordinates
chr6:44230985-44238082:+
Coord C1 exon
chr6:44230985-44231092
Coord A exon
chr6:44234776-44235429
Coord C2 exon
chr6:44237984-44238082
Length
654 bp
Sequences
Splice sites
3' ss Seq
TTTCTCTCTTTTAAAACAAGAAG
3' ss Score
1.56
5' ss Seq
GAGGTAGAA
5' ss Score
4.54
Exon sequences
Seq C1 exon
ATGTCAGTTCTTATATCACAGAGTGTGATAAATTATGTGGAAGAAGAGAATATTCCTGCTCTGAAAGCTCTTCTTGAGAAGTGCAAAGATGTAGATGAGAGGAACGAG
Seq A exon
AAGCAACAAACAAAACTCCACAAAAACAGAAATCAAGGCAAACAGACAAAAAGCCAGTACAACAACAACAACACGCCAGAGGAAAGCAAAGTTGAAAGCTCTCAGAATACCACTGGGTTAATTCTGTGTTGCCAATTACTCTTGGGCACGGGCCTGCCCTGGAGTATGGTCTGTAGGCTCAGTGACACTGTAAGTGTTTCTGCTCTGACAGCCATCCCTGGATTAGTCCTTCCTCCTCCTAGATGCTTCCCTTCAGTGAATCTCCTTTATGAGATTTACTGCCTGGAGTGGCTCTGTGGAAGAAGCTGAGAAGAAAAGCAGCAGAGAAGACAGGACAGCAAGCTTAGCAACACAGTGTGGTCCTGAGCTCCTCAACTCAGCTGGGGATACCCTCCCCTGGGAGCTGCATGGCCTCTGCTGAGGAGACTTCCTCAGAGTTTTAAGCTTCCTGAGCTCCTGAATCTCAGGATACGCCTCCCTTGGGACCCTGTCACTGTCACATCTCAAAGCTGTGTGGTTCCTGGTTCCTAGATGTCTGCGTCCCAGGATACCCTTCCATCTGAGCAGACACTTACAGACACTCCCCTGGAACAAAACAGCCTGGTTTTCCCTTTGCCAGCCTGGTGTCAAATGATTGTGACTTCTTGGTTAGAG
Seq C2 exon
TGTGGCCAGACGCCGCTGATGCTGGCTGCGGAGCAGGGCAATGTGGAAATAGTGAAAGAACTGTTAAAGAATGGAGCCAACTGCAATCTGGAAGATCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000023176_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.013 A=0.314 C2=0.000
Domain overlap (PFAM):
C1:
PF054786=Prominin=PU(36.8=88.9)
A:
PF054786=Prominin=PD(60.9=51.5)
C2:
PF127962=Ank_2=PD(50.8=93.9),PF127962=Ank_2=PU(2.9=6.1)
Main Inclusion Isoform:
ENSRNOT00000005858fB7310
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGTCAGTTCTTATATCACAGAGTGT
R:
AGATCTTCCAGATTGCAGTTGGC
Band lengths:
206-860
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]