RnoEX0047078 @ rn6
Exon Skipping
Gene
ENSRNOG00000005299 | Kif5a
Description
kinesin family member 5A [Source:RGD Symbol;Acc:1303035]
Coordinates
chr7:70529216-70529853:-
Coord C1 exon
chr7:70529647-70529853
Coord A exon
chr7:70529479-70529491
Coord C2 exon
chr7:70529216-70529362
Length
13 bp
Sequences
Splice sites
3' ss Seq
TTTGCCCTTCTCTCTTCCAGAGG
3' ss Score
11.65
5' ss Seq
AGGGTCTGT
5' ss Score
2.7
Exon sequences
Seq C1 exon
CTGCTAGTGTCCACTCGGGGAGACAATGAGAAGGTCCAGCGGGAGCTGAGCCACCTGCAGTCTGAGAACGATGCCGCGAAGGAGGAGGTGAAGGAAGTGTTGCAGGCCCTGGAGGAGCTGGCAGTCAACTATGACCAGAAGTCCCAGGAGGTGGAGGAGAAGAGCCAGCAGAACCAGCTGCTGGTGGATGAGCTGTCCCAGAAAGTG
Seq A exon
AGGCTTCTGCAGG
Seq C2 exon
GCCACCATGCTGTCCCTGGAGTCTGAGCTACAGCGGCTCCAGGAAGTCAGTGGACACCAGCGAAAACGGATTGCTGAGGTGCTGAATGGACTGATGAAGGACCTGAGTGAGTTCAGTGTCATCGTGGGCAACGGCGAGATTAAGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005299-'22-18,'22-17,23-18
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.425 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSRNOT00000007721fB7368
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGACCAGAAGTCCCAGGAGG
R:
CTCAGACTCCAGGGACAGCAT
Band lengths:
104-117
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]