RnoEX0047536 @ rn6
Exon Skipping
Gene
ENSRNOG00000006814 | Klrg2
Description
killer cell lectin like receptor G2 [Source:RGD Symbol;Acc:1587495]
Coordinates
chr4:66371973-66375600:-
Coord C1 exon
chr4:66375455-66375600
Coord A exon
chr4:66373990-66374315
Coord C2 exon
chr4:66371973-66372076
Length
326 bp
Sequences
Splice sites
3' ss Seq
ACACACATCTTATCTCCTAGGCC
3' ss Score
8.19
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
Exon sequences
Seq C1 exon
GAGCCAAATGCCAACCGTGCCCTCAAGGCTGGATGTGGTCTCAGGAACACTGTTACTACCTCTCTGAAGAAGTCCAAGACTGGGAGAGCAGCCAAGCATTTTGCTCAGCCCACCAGGCCACACTGCCTCTGCTGAACCACACCCAG
Seq A exon
GCCTAAGCCAGCTCCATTCTACAACTGCTGTCCTTGGTGGCCATCCCATGGTCCTGACATCTCCAAATTGTTGGAGTCTCCACTGCAACTAGCTGCACCTTCACCTGCCTCCCCTGGGCTCTCTTCGGGAACTCTGACCTTGCCACATGTGTAAAGCCTCAACTTCTCTCCATGGCCCCCTCAACTCTTTGGCTTCTACTTCAATCGAGGCTGCACCTTCACCACTGGCCTCTCCTCTCATGATGCCAAGCCTCAATTGCTCTCCATGACCTCTTCATGCCTTCAAATCTAGTACCATGGGGACTCTTACACATTACCAACACAAG
Seq C2 exon
GACTTCTTAAGAAAATACCAGGTCACCAAGGGCTCCTGGGTGGGGGCCCGACGAGGCCCTGAAGGCTGGCACTGGACTGATGGGGTTCCCTTGCCATCCCAACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006814_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005916=Lectin_C=PU(25.8=51.0)
A:
NO
C2:
PF0005916=Lectin_C=FE(35.1=100)
Main Inclusion Isoform:
ENSRNOT00000009194fB7452
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CAAATGCCAACCGTGCCCTC
R:
AGTTGGGATGGCAAGGGAAC
Band lengths:
246-572
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]