RnoEX0048068 @ rn6
Exon Skipping
Gene
ENSRNOG00000052604 | LOC100361907
Description
complement factor H-related protein B [Source:RGD Symbol;Acc:2319172]
Coordinates
chr13:56747739-56763981:-
Coord C1 exon
chr13:56763909-56763981
Coord A exon
chr13:56759246-56759419
Coord C2 exon
chr13:56747739-56747776
Length
174 bp
Sequences
Splice sites
3' ss Seq
TTTCAAATGCTTACTTTCAGGAA
3' ss Score
8.49
5' ss Seq
GTTGTAAGT
5' ss Score
8.3
Exon sequences
Seq C1 exon
ATGGGGTTCTGTAACCTGTTGCTCTTAACCACTGTCTTCCTAACCTTATGGTTCACTACTTCCAAAGGTGAAG
Seq A exon
GAATAGCATGCAAACCCCCGTATATTCCAAATGGAATCTACTCACCTCATAAGATTAACTACACAATCGATGATGAAATAAAATATGAATGTAAAAATGGCTTCTACCCTGCAACAAAGGGAACTGTTGCAAAGTGTACAAGTACTGGATGGATCCCTCTTCCAAGATGTAGTT
Seq C2 exon
TGAAGCCTTGTGATTTTCCACAATTCAACCATGGACGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000052604_MULTIEX1-2/2=C1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0008415=Sushi=WD(100=91.5)
C2:
NO
Main Skipping Isoform:
ENSRNOT00000087916fB7533
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTCTGTAACCTGTTGCTCTTAACC
R:
ACGTCCATGGTTGAATTGTGGA
Band lengths:
106-280
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]