RnoEX0048094 @ rn6
Exon Skipping
Gene
ENSRNOG00000059492 | LOC100365363
Description
vomeronasal 1 receptor, F4-like [Source:RGD Symbol;Acc:2319215]
Coordinates
chr1:60885535-60894948:+
Coord C1 exon
chr1:60885535-60885663
Coord A exon
chr1:60886091-60886237
Coord C2 exon
chr1:60890906-60894948
Length
147 bp
Sequences
Splice sites
3' ss Seq
GGCAATGTGATATGTTCTAGAAC
3' ss Score
5.46
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
GAATGACACTTCAAAGTCTGAATGCTGTGTCTAAGTTGGAACAAAACAAAGGACCCTGGACCGTGGAGAGTGAGGCAATAATAACCAGAAAATCAAATGTACAGGAATATGCCATAGCTATGAATGCAG
Seq A exon
AACTTTCTGCAGGGCAGGAGAATGGGTTGCAAGATTGTGCTGTGCAGACCAGGCTGGCATGAAAATCTTAGTCCTCTTGCCGCAGCCTGACAAGTGAGGAGATTATATATGAGCTTCCATTCTTGCTTCAAATAGAACTTTGAAGAG
Seq C2 exon
AAAATATTGATTGTATGGAAGCTAAGTCCATCAGCAACGGCTCTTCAATTTTGTCCTCTGACAGAATTTTTCTTAGTGGTGACAAAGCACCCTTTGTTCATGAATATGATGTTTATTCTTCACTACTTATGAAAGGACAGAAAGCAGCCATTAAGGAAAAACCTTATCAATGTAATGAATGTGACAAGGTCTTCCGTTATACTTCTTCTCTAGCATATCATCGGCAAATTCATACTGGAGAGAAACTTTACAAATGTGTTGAGTGTGGTAAGGCTTTTTTTCGACGTTCTTACCTTTTGGTACATGAGAGGCATCATTCTGGAGCGAAACCTTACAAATGTAATGAATGTGGTAAGGTCTTCAGTCAGAATTCACACCTTAAAAGTCACCGAAGAATTCATACTGGTGAGAAGCCATACAAATGTAATGATTGTGGCAAAGCCTTTAGTGTTCGTTCAAACCTAACTCACCATCTGGTAATCCATACTGGAGATAAACCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000059492_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.068
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NO
C2:
PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.6),PF0013017=C1_1=WD(100=9.2),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.6),PF0013017=C1_1=WD(100=9.6),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.6),PF0013017=C1_1=WD(100=9.2),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.6)
Main Inclusion Isoform:
ENSRNOT00000088689fB7538
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAACAAAGGACCCTGGACCG
R:
CCTTAATGGCTGCTTTCTGTCCT
Band lengths:
243-390
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]