RnoEX0048112 @ rn6
Exon Skipping
Gene
ENSRNOG00000046338 | LOC100909824
Description
zinc finger protein 60-like [Source:RGD Symbol;Acc:6501656]
Coordinates
chr1:84533967-84543966:+
Coord C1 exon
chr1:84533967-84534065
Coord A exon
chr1:84536190-84536343
Coord C2 exon
chr1:84542396-84543966
Length
154 bp
Sequences
Splice sites
3' ss Seq
ACACCACGTGTCCTCCACAGGTC
3' ss Score
10.99
5' ss Seq
CATGTAAGG
5' ss Score
6.57
Exon sequences
Seq C1 exon
TGGGGAGATGCATTTCCAAGCCACATCTGATCACCTTACTAGAGCAGGAGAAAGAGCCCTGGATGGCTGTGAAGGAAGAATCAGACAGGCCGAGCCCAG
Seq A exon
GTCTTGTCCCACCGTGTGTCTTGCCTCATCATGGGAGTTTTGTCTCAGTAAAATTCCACGACATCACCCTGCCAAGAAGCTGTAGCACTCCACCAGAAGTATTTTGGTGCTTTTTCTCTCAATGGTGTCCCAACAAATGAAGCTCAACAGTCAT
Seq C2 exon
GTGTGAAGACATGTTTTAAAGCTGAAAATGTTTCTGATATAAACGTAAACAAACAGAGCATAAAGCACTTAAGTAAAACTTTTGACCTCAAAGAGTCTACTTTTAGTGATGGCCCCAACTACAGGACACTCAGTGGACTACAGGGTTGTCAAGGAGATGCTGATCAAAAGAGTAATAACAAGGACGGAACGCCCCCTTACACCTGCCAGGCTCTTGCTCACAATGTAGAAAGAGCCTATGAATGTAAGGAGTGTGGGAAGGCCTTCAGACTTCCCCAACAGCTTACAAGACATCAGAAGTCTCACAGTGGTGAGAAACCTTTCAAGTGCAATGAGTGTGGAAAGGCGTTTCATCTTCCTGGCCTGCTCAAGTACCATAAAACCATCCATACAGGTGAAAAACCTTTTGAATGTGAAGAATGTGGGAAGTCCTTCAATTGTGTCTCCCACCTCGTTGAACACAGGACCATTCATGCTGGTGTGAAACCCTATGAGTGTAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000046338-'8-7,'8-6,9-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=0.235 A=0.000 C2=0.046
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NO
C2:
PF134651=zf-H2C2_2=WD(100=3.8),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=5.0),PF051298=Elf1=WD(100=13.5),PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=5.0)
Main Inclusion Isoform:
ENSRNOT00000073966fB7544
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAAGAATCAGACAGGCCGA
R:
CAAGAGCCTGGCAGGTGTAAG
Band lengths:
243-397
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]