RnoEX0048223 @ rn6
Exon Skipping
Gene
ENSRNOG00000023469 | LOC100912836
Description
leucine-rich repeat-containing protein PRAME-like [Source:RGD Symbol;Acc:6485636]
Coordinates
chr2:102443281-102448871:+
Coord C1 exon
chr2:102443281-102443381
Coord A exon
chr2:102443590-102443666
Coord C2 exon
chr2:102448790-102448871
Length
77 bp
Sequences
Splice sites
3' ss Seq
TTCCTACTTCCTCTTTAAAGTTC
3' ss Score
7.84
5' ss Seq
GTGGTATGT
5' ss Score
7.64
Exon sequences
Seq C1 exon
GCCGTTAAGACTATGGCGCCCCCGCCGTGGGGATAGCCTCTCAGACAATGAGGGGCTGCCAAAGTTGAGAAAATGGGAAGTCCGAGGACTTAACTACTTAG
Seq A exon
TTCTTCATATATCCCGTAATCTCTTCTTCAAAAAACTATATTCCTGAGAAGAACTTGGTGACTTTTCAACGGCTGTG
Seq C2 exon
GTTGGAGCCAACTGAGGGTTTACTTTGGATTTCCTCATCTTTATTAACTTGCATATTGGCGCTGATCCCTGATCAATAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000023469_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTTAAGACTATGGCGCCCC
R:
GGGATCAGCGCCAATATGCAA
Band lengths:
168-245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]