RnoEX0048366 @ rn6

Exon Skipping

Gene

ENSRNOG00000037421 | LOC102554913

Description

zinc finger protein 120-like [Source:RGD Symbol;Acc:7711909]

Coordinates

chr14:6355911-6358720:-

Coord C1 exon

chr14:6358564-6358720

Coord A exon

chr14:6358306-6358366

Coord C2 exon

chr14:6355911-6356922

Length

61 bp

Sequences

Splice sites

3' ss Seq

TTTCTGGTACTGTGTTTTAGGCT

3' ss Score

9.44

5' ss Seq

AAGGTAATT

5' ss Score

8.83

Exon sequences

Seq C1 exon

ACACATACATGTGTATGTGTGATATCTGAGAAGGCAGTGACATATGAGGACATTCATGTGAACTTTACTCGGGAAGAATGGGCTTTGCTGGATCCTTCCCAGAAGAGTCTCTACAGAGATGTGATGCTGGAGACCTACGAGAACCTCACTGCTATAG

Seq A exon

GCTCTTACTGGGAAGAACATATTATTGAAGAAAATTGTCAAAATTCTAGAAGACATGGAAG

Seq C2 exon

CCATCTTGACTGGAATGAAAGAATTCACACTGGAGAGAAAACCAATGAAGTTGTGCAATACAAAGAAGGGTTTGCAAGTCAAAATCATCTTCATACACATAAAAGCACACTTACTGAACCCTTTGTATACTATAGTACTGTTCAAGTAAACAGAAAAGCACAAACAGGAGAGAAACCTGGAGGATTTAACCAATGTGAAAATGCCTTTTTATCAAACACCTATCTGAGATGCCATAAAAAAAGTCATACTACGGAGAAACACTACGCATGTAACCAGCGTTGTAAAGCTTTTGCACAAATCTGTAGTCCTCAAAACCATACAAAAACTCATCCTGAAGAGAAGCCCTATGAATGTAACCAATGCAGCAAAGTCTTTTCATCGCACAAGTCTCTGCAAGCCCATAAAAAAACACATACTGGAGAGAAGCCCTATACATGTAACCAATGTGGCAAAGCCTTTGCTAAACATGCCCATCTACAAAGACATAAAAGTACACATA

VastDB Features

Vast-tools module Information

Secondary ID

ENSRNOG00000037421_CASSETTE1

Average complexity

S

Mappability confidence:

100%=100=100%

Protein Impact

ORF disruption upon sequence exclusion

No structure available

Features

Disorder rate (Iupred):

C1=0.000 A=0.016 C2=0.106

Domain overlap (PFAM):

C1:

PF0135222=KRAB=WD(100=77.4)

A:

PF0135222=KRAB=PD(0.1=0.0)

C2:

PF134651=zf-H2C2_2=WD(100=7.7),PF134651=zf-H2C2_2=WD(100=7.7),PF134651=zf-H2C2_2=WD(100=7.7),PF134651=zf-H2C2_2=WD(100=7.4),PF134651=zf-H2C2_2=WD(100=7.4),PF134651=zf-H2C2_2=WD(100=7.7),PF134651=zf-H2C2_2=WD(100=7.7),PF134651=zf-H2C2_2=WD(100=7.7)

Main Inclusion Isoform:

ENSRNOP00000076207

Main Skipping Isoform:

NA

Other Inclusion Isoforms:

ENSRNOP00000045489, ENSRNOP00000076080

Other Skipping Isoforms:

NA

Associated events

Conservation

Human

(hg38)

NA:-

Human

(hg19)

No conservation detected

Mouse

(mm10)

NA:-

Mouse

(mm9)

No conservation detected

Cow

(bosTau6)

No conservation detected

Chicken

(galGal4)

No conservation detected

Chicken

(galGal3)

No conservation detected

Zebrafish

(danRer10)

No conservation detected

Fruitfly

(dm6)

No conservation detected

Primers PCR

Suggestions for RT-PCR validation

F:

TGCTGGATCCTTCCCAGAAGA

R:

GCAAACCCTTCTTTGTATTGCACA

Band lengths:

147-208

Functional annotations

(Submit an annotation)

There are 0 annotated functions for this event

GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]

Special

RnoEX0048366 @ rn6

GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]