RnoEX0048426 @ rn6
Exon Skipping
Gene
ENSRNOG00000055496 | LOC103690166
Description
zinc finger protein OZF-like [Source:RGD Symbol;Acc:9236890]
Coordinates
chr8:23308765-23311879:-
Coord C1 exon
chr8:23311620-23311879
Coord A exon
chr8:23310608-23310671
Coord C2 exon
chr8:23308765-23308859
Length
64 bp
Sequences
Splice sites
3' ss Seq
TACATTCGTTTCCTCTCTAGCCC
3' ss Score
8.2
5' ss Seq
ATGGTAGGA
5' ss Score
6.66
Exon sequences
Seq C1 exon
GATTGGTGCCAGCTTCTGTCAGTCAGGGTCTGAGCCGGATGAGAACTGAAGCCCTGTCCAATCGAAGGCGCCGGGGTGAGAACCGTGCAATCAGGCGAACAGACAAAGGTAAGGGGGCGGGCTTTCACGGTCCTGCTAAGGCCTTTGTCTGTGACGTACCAGCATACCACCATCTTGGAATCTGGAACCGGGGACTCTGTCGGTACCGGGACGGGTCTGCGCGGCGCAGCGAGGACGCGGGGTGTCTGGACTCCGCCATG
Seq A exon
CCCTGGCAGCCTTCATCTGGATGGAGATAACACGGAAAGATGCCCAGGTTGATGGATGGCCATG
Seq C2 exon
ATGTAGACTTGCGTTTTCCTGGGAAATCCTCAGGACATAGTACTTCCAGAAAGTCCGAGGGAGGGAAGAACTCCGTTCCCTGGAAGCTGGAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000055496_MULTIEX1-1/12=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GAATCTGGAACCGGGGACTCT
R:
CCTCCCTCGGACTTTCTGGAA
Band lengths:
147-211
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]