RnoEX0048462 @ rn6
Exon Skipping
Gene
ENSRNOG00000060019 | LOC103692984
Description
uncharacterized LOC103692984 [Source:RGD Symbol;Acc:9397727]
Coordinates
chr7:142861271-142868718:-
Coord C1 exon
chr7:142868580-142868718
Coord A exon
chr7:142863970-142864108
Coord C2 exon
chr7:142861271-142861366
Length
139 bp
Sequences
Splice sites
3' ss Seq
CTTTGTGTTTTGCCTACAAGTAT
3' ss Score
4.34
5' ss Seq
AAGGTATGT
5' ss Score
9.79
Exon sequences
Seq C1 exon
AGGAGGAAACTGAGACCCAGACAGAAAGCACCTTGCCAGGAAGGTCCTCGAACAGGAAGGACAAAGCTGACGTCCCAAACAAGGCACGTTCTGGAACTTCTGCCTAACTACTCTGTGATGCTGACTTCAATTCTTCCTG
Seq A exon
TATGCAACTGCATGTATGGTGCCCACAGAGGCCGGAAAGGACATTGGAGCCCCTGGAACTGGATGATATAGTTCCCAGCTGTTCGTGAATGTAGATGAGGTTGGCTTCAAACTCGTGGAGCTAAGTTCTGGGGTGGAAG
Seq C2 exon
ATGGAAGACCTGCAGAAGGCAGCATGCAGAAGTTGCAAGTCCTTTCTACAACAGCAGTCTACAAATGGAAGCCGTGGGCCTGGATGTTAGCACATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000060019_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAGGAAACTGAGACCCAGAC
R:
CATGTGCTAACATCCAGGCCC
Band lengths:
235-374
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]