RnoEX0048467 @ rn6
Exon Skipping
Gene
ENSRNOG00000003349 | LOC103693323
Description
collagen alpha-1(XXIII) chain [Source:RGD Symbol;Acc:9310824]
Coordinates
chr10:37024463-37026913:+
Coord C1 exon
chr10:37024463-37024549
Coord A exon
chr10:37025913-37025972
Coord C2 exon
chr10:37026875-37026913
Length
60 bp
Sequences
Splice sites
3' ss Seq
CACGGTGGGCATACACACAGCTG
3' ss Score
0.77
5' ss Seq
CAAGTGAGT
5' ss Score
9.1
Exon sequences
Seq C1 exon
GGGGAGCGAGGAGTTCCTGGTCGGAAAGGAGTGAAAGGCCAGAAGGGAGAGCCAGGCCCACCAGGCCTTGACCAGCCATGCCCTGTG
Seq A exon
CTGCGAGGGTAAAGAAGCCCAGTCCTGCTTCCACAAAGCCTGGACCCAGACTTCCTCCAA
Seq C2 exon
GGCCCCGACGGGTTGCCTGTGCCTGGTTGCTGGCATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003349_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(41.3=89.7)
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSRNOT00000064078fB7606
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTCGGAAAGGAGTGAAAGGC
R:
CTTATGCCAGCAACCAGGC
Band lengths:
108-168
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]