RnoEX0048493 @ rn6
Exon Skipping
Gene
ENSRNOG00000053042 | LOC103694540
Description
zinc finger Y-chromosomal protein 2 [Source:RGD Symbol;Acc:9203794]
Coordinates
chrY:182690-184766:+
Coord C1 exon
chrY:182690-182771
Coord A exon
chrY:183710-183813
Coord C2 exon
chrY:184622-184766
Length
104 bp
Sequences
Splice sites
3' ss Seq
TTTGTTCACTATGAAAAAAGATT
3' ss Score
-0.94
5' ss Seq
AAGGTTACT
5' ss Score
1.25
Exon sequences
Seq C1 exon
TCAGCTAGAGCCGGGTCCAGTACTTTGGGATAGGTTGGTCTGCATCACTTGTCATCATTGCCCACTCCTCTACACTGGTCTG
Seq A exon
ATTCAGCATGTATCTGTCTTCTGAAAGTTCTGTGCTGAAATTTCACCGGAAAAGAAATCTTCCATCAAGGAAATGGTTCTGAAATAGGAAGGCCTTTTCATAAG
Seq C2 exon
AAGTAGTTTCTTGATATCTTGGCAGCTGAAGAAATTTAAACTGAAAAATTACATGTTGCACAGTACAGAAGCAAAAGGTGTTCCAGTACAGCCATTGTGAATATGCAAGATTAAGATAAAATTAGAAGCATACTTTTTATGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000053042_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTAGAGCCGGGTCCAGTACTT
R:
TCTTAATCTTGCATATTCACAATGGC
Band lengths:
194-298
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]