RnoEX0048494 @ rn6
Exon Skipping
Gene
ENSRNOG00000053042 | LOC103694540
Description
zinc finger Y-chromosomal protein 2 [Source:RGD Symbol;Acc:9203794]
Coordinates
chrY:191934-210588:+
Coord C1 exon
chrY:191934-192021
Coord A exon
chrY:205192-205257
Coord C2 exon
chrY:210037-210588
Length
66 bp
Sequences
Splice sites
3' ss Seq
ATAAAAAATTCTCTTTACAGTTT
3' ss Score
7.52
5' ss Seq
CAGGTATTA
5' ss Score
7.26
Exon sequences
Seq C1 exon
GAGCTGACTTAGTCAGAACTGAAAGCCATGGATGAAGAAGAAATTGAATTGACTCCACAGGAAGAAAACTCATTGTTTGATGGAATAG
Seq A exon
TTTTTCAGGATGCCTTTCATACATTCCCATTTGAACATCATCACACTCCTATGACATGCATGGCAG
Seq C2 exon
GAGCTGATGCAGTACACATGGATGGTGACCAGATTATTGTGGAAGTTCAAGAAACTGTTTTTTTATCTAATTCAGATGTAACTGTGCATAATTTTGTTCCTGATGATCCAGACTCAGTTATAATTCAAGATGTTATTGAAAATGTTCTTATTGAAGATGTTCACTGCTCAAATATTTTAGAGGAAACAGATATATCTGACAATGTCATTATTCCTGAGCAAGTGCTTGATTTAGATACAGCTGAAGAAGTGTCTTTAGCACAGTTTCCAATTCCAGACATTTTAGCTTCTAGTATTACATCAACCTCATTAACTATGCCTGAACATATCTTGATGAGTGAAGCTATACATGTGTCTGATGTAGGACACATTGAACAAGTGATTCATGATAGTCTAGTAGAAACAGAAGTCATTACTGATCCTCTGACAGCCGACATTTCAGAAATACTGGTAACAGATTGTGCTTCTGAAGCAGTCTTAGATTCCAGTGGAATGCCTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000053042_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.738 A=0.087 C2=0.135
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF047048=Zfx_Zfy_act=PU(42.9=74.6)
Main Inclusion Isoform:
ENSRNOT00000077708fB7611
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCATGGATGAAGAAGAAATTGA
R:
ACTGAGTCTGGATCATCAGGAACA
Band lengths:
183-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]