RnoEX0048538 @ rn6
Exon Skipping
Gene
ENSRNOG00000058436 | LOC108348215
Description
zinc finger protein 420-like [Source:RGD Symbol;Acc:11371780]
Coordinates
chr1:61489692-61502632:+
Coord C1 exon
chr1:61489692-61489782
Coord A exon
chr1:61501622-61501650
Coord C2 exon
chr1:61502562-61502632
Length
29 bp
Sequences
Splice sites
3' ss Seq
TGTTACTGTATTTACTCCAGGTT
3' ss Score
8.94
5' ss Seq
GAGGTAGGA
5' ss Score
8.24
Exon sequences
Seq C1 exon
GGCTCACTGATCACCCAGACCTGCTCACCTGTGGAACAGAACAAAGAGACCTGGACGATGGAGAAGGAGGAGACAGTAGCTAAGGATCCAG
Seq A exon
GTTGTGAACTCACATCTGAAGATTTGGAG
Seq C2 exon
ATACACAAGCTGGCTATTCATTGTTCTTCAAAGAGAAAATCAAAGAAGAGAAACAGAAGGACATGTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000058436_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.556 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSRNOT00000089298fB7625
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCACTGATCACCCAGACCT
R:
ACAATGAATAGCCAGCTTGTGT
Band lengths:
114-143
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]