RnoEX0048541 @ rn6
Exon Skipping
Gene
ENSRNOG00000058436 | LOC108348215
Description
zinc finger protein 420-like [Source:RGD Symbol;Acc:11371780]
Coordinates
chr1:61444529-61489782:+
Coord C1 exon
chr1:61444529-61444640
Coord A exon
chr1:61445669-61445803
Coord C2 exon
chr1:61489692-61489782
Length
135 bp
Sequences
Splice sites
3' ss Seq
TATCTATTCATATTGCCTAGGGT
3' ss Score
6.97
5' ss Seq
GAGGTAAAG
5' ss Score
8.27
Exon sequences
Seq C1 exon
AAATAGGGTATTACTATGGAACCTTGGCTGATCAGAAATTCAGTATTCCAGGCTGGCCTTCAACTCACAGAGATCTGCTTGACTCTGCCTGCCGAGTGTAGGGATTAAAGCT
Seq A exon
GGTCCACTGAGGTCAACCAGAGCCATTTGTGAGGCTGAGGGTTTGGAGTTATGTGCTGGAGCCTGAGTGCTCAGCAGAGGATGACAACTAAAGCAGTGATTCTTCCACAATATATCCATAGCCAACGTCTGAGAG
Seq C2 exon
GGCTCACTGATCACCCAGACCTGCTCACCTGTGGAACAGAACAAAGAGACCTGGACGATGGAGAAGGAGGAGACAGTAGCTAAGGATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000058436_MULTIEX1-3/4=2-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.556
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATAGGGTATTACTATGGAACCTTGG
R:
CTGGATCCTTAGCTACTGTCTCCT
Band lengths:
202-337
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]