RnoEX0048609 @ rn6
Exon Skipping
Gene
ENSRNOG00000013245 | LOC286960
Description
preprotrypsinogen IV [Source:RGD Symbol;Acc:708585]
Coordinates
chr4:69209668-69211671:-
Coord C1 exon
chr4:69211620-69211671
Coord A exon
chr4:69210202-69210364
Coord C2 exon
chr4:69209668-69209921
Length
163 bp
Sequences
Splice sites
3' ss Seq
TATACAAAACTCTTCCCCAGTTG
3' ss Score
4.9
5' ss Seq
AAGGTAATG
5' ss Score
8.99
Exon sequences
Seq C1 exon
CACTGAAACACCATGAAGATCAGCATCTTCTTTGCTTTTCTCGGAGCTGCTG
Seq A exon
TTGCTCTCCCTGTTAATGATGATGACAAGATTGTTGGAGGCTACACATGTCCGAAGCATTTGGTTCCTTACCAGGTGTCTTTGCATGATGGCATTAGCCACCAGTGTGGTGGCTCCCTTATCAGTGATCAGTGGGTACTGTCTGCTGCTCATTGCTACAAAAG
Seq C2 exon
GAAACTCCAGGTTCGCCTTGGTGAACACAATATTCATGTTCTTGAGGGTGGAGAGCAATTCATTGATGCAGAAAAGATCATTCGACACCCTGAGTATAACAAGGACACTCTGGACAATGACATCATGCTGATTAAATTGAAGTCACCTGCCGTCCTTAACTCCCAAGTATCTACGGTCTCTCTGCCCAGATCCTGTGCATCTACAGATGCTCAGTGCCTTGTGTCTGGCTGGGGAAACACTGTGAGCATTGGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013245-'0-1,'0-0,1-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0008921=Trypsin=PU(20.3=80.0)
C2:
PF0008921=Trypsin=FE(39.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTGCTTTTCTCGGAGCTGCT
R:
CCAGACACAAGGCACTGAGC
Band lengths:
250-413
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]