RnoEX0048902 @ rn6
Exon Skipping
Gene
ENSRNOG00000042308 | LOC680200
Description
similar to zinc finger protein 455 [Source:RGD Symbol;Acc:1594231]
Coordinates
chr1:37811063-37811741:-
Coord C1 exon
chr1:37811615-37811741
Coord A exon
chr1:37811283-37811345
Coord C2 exon
chr1:37811063-37811158
Length
63 bp
Sequences
Splice sites
3' ss Seq
TTTAATGTTTTCTTTTTAAGGAA
3' ss Score
11.15
5' ss Seq
CATGTAAGG
5' ss Score
6.57
Exon sequences
Seq C1 exon
GAAATGCTGTCCTTCTGGGATGTGGCCATTGATTTCTCTCCAGAAGAGTGGGAGTGCCTGGAGCCTGTTCAGTGGAATCTATACAGGGACGTGATGTTGGAGAATTACAGCAACCTTGTGTTCCTGG
Seq A exon
GAAACTCAGAATCAGGATATTGTACATTCCTTCATGTATTGTACTGGATGTGTCAGAAACCAT
Seq C2 exon
GTCTAACTTTCTCTAAGCCATTCTTGGTGACATTCCTGGAGCAGAGACAAGGGCCTTGGGATATGCAGAGACAAGCAGCAGCCCCTGTGCACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000042308_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.076
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=97.6)
A:
PF0135222=KRAB=PD(0.1=0.0)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
ENSRNOT00000043747fB7693
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCCAGAAGAGTGGGAGTGC
R:
TCTGCTCCAGGAATGTCACCA
Band lengths:
136-199
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]