RnoEX0049119 @ rn6
Exon Skipping
Gene
ENSRNOG00000022737 | LOC691970
Description
similar to deleted in malignant brain tumors 1 isoform c precursor [Source:RGD Symbol;Acc:1593322]
Coordinates
chr1:201772856-201788561:+
Coord C1 exon
chr1:201772856-201772921
Coord A exon
chr1:201777616-201777681
Coord C2 exon
chr1:201788211-201788561
Length
66 bp
Sequences
Splice sites
3' ss Seq
CTAATTTCCTTCTCCCACAGGTG
3' ss Score
12.02
5' ss Seq
CAGGTTAGT
5' ss Score
8.02
Exon sequences
Seq C1 exon
TTCTACCTGTGGCTGACCCAGTACCTGGCAGTCGAAGAGCGCATGTGCCCAGGCTCAGCCTCAATG
Seq A exon
GTGCTGACATGTCACCAGACCCCACTCCAGTAATAGATCCCGATCCCGAGTCATCAAAGCCATCAG
Seq C2 exon
GAGACTGGGCCCCTGTGCGGCTGTCAGGCAACCACGGCAGCTGTGCGGGCCGTGTAGAACTCTTCTACCAAGGAGTCTGGGGCACTGTGTGTGATGACCTCTGGGACCTCACAGAAGCAAACATCATCTGCAGGCAGCTAGGGTGTGGCCGGGCTGTTTCAGCCCTGAGTGAAGCTTACTTTGGGCAAGGTTCTGGGAAGATTCTTCTTGACAACGTGCATTGCAAGGGGCATGAGGAGCACCTGGAGGAGTGCTCCCACCTTGGGTGGTTCTCCCACAACTGTGATCACAGTGAAGATGCCAGTGTCATCTGCTCAGGTGAGGCCCACTGTCCTTTAGGGCCTAGCTTCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000022737-'5-6,'5-5,6-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.522 A=1.000 C2=0.042
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0053013=SRCR=WD(100=83.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTACCTGTGGCTGACCCAGTA
R:
CTGTGAGGTCCCAGAGGTCAT
Band lengths:
178-244
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]