RnoEX0049126 @ rn6
Exon Skipping
Gene
ENSRNOG00000022737 | LOC691970
Description
similar to deleted in malignant brain tumors 1 isoform c precursor [Source:RGD Symbol;Acc:1593322]
Coordinates
chr1:201802021-201804921:+
Coord C1 exon
chr1:201802021-201802074
Coord A exon
chr1:201803766-201803795
Coord C2 exon
chr1:201804604-201804921
Length
30 bp
Sequences
Splice sites
3' ss Seq
TTTGTTTTTCTTACTTATAGATG
3' ss Score
9.73
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
Exon sequences
Seq C1 exon
AGCCTACACATACTCCTAGTGGGAATGTCTCACCTCTTCCCGTGCCTGACTCAG
Seq A exon
ATGCTGAAAAACCTCTGTCCCATGTTCCAG
Seq C2 exon
GAGACTGGCCAGAACTTCGCCTAGTGGGTGGCTCCAGTCGGTGCTCAGGACGAGTGGAAATCCTCCACCAGGGAGTCTGGGGCACCATATGTGATGACCTGTGGGGTTCAAATGAAGCTGAGGTTGTATGCCGCCAGCTAGAGTGTGGGCAGGCTGTTTCTAGTCTTGGTGAGGCTTACTTTGGCCCAGGCTCAGGAGACATCTTCCTAGACAATCTTCAGTGTTCCGGACTGGAACATTACCTCAGCCAGTGTCCACATTCGGGATGGTCTGAACACAACTGTGGGCACCATGAGGATGCTGGTGTTATCTGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000022737_MULTIEX2-2/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.877 A=0.727 C2=0.019
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0053013=SRCR=WD(100=91.6)
Main Inclusion Isoform:
ENSRNOT00000039130fB7740
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAATGTCTCACCTCTTCCCG
R:
TCACATATGGTGCCCCAGACT
Band lengths:
127-157
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]