RnoEX0049308 @ rn6
Exon Skipping
Gene
ENSRNOG00000059507 | Lamc3
Description
laminin subunit gamma 3 [Source:RGD Symbol;Acc:1309399]
Coordinates
chr3:9275538-9277676:-
Coord C1 exon
chr3:9277574-9277676
Coord A exon
chr3:9276635-9276846
Coord C2 exon
chr3:9275538-9275737
Length
212 bp
Sequences
Splice sites
3' ss Seq
AACTGGAAACTCTGTTGCAGAGT
3' ss Score
4.33
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
CTACGAAACAAGACCACAGCTGCCCTGACACAGGTTTCCTCAGCTGTCCAAGCTGCTAAGGTGACCGTCATAGGAGCGAAGACCCTGCTAGCTGACCTAGAGG
Seq A exon
AGTTTCTCTTTAGAGCGGGGGCAGGCTTCGTGCTTGCCCAAACTTCTGCAGCTTTAAGAAAATGGAGTTATGTGGGGGATGGTGGCAACGGGAGGCAGAGGAGGGAGGACCTCTGAGTCCCAGGCCCGCCTGGTCTGCACACTGAGTTCCAGGACAGCCAGGGCCACACGAGGAACCCTGTCTCAAAAGAAGCCAAGTGACCTGTTTTACAG
Seq C2 exon
GAATGAAGCTAAGGTTCCCTCTACCCAAGGAGCAGGCAGCGCTGAAGAGGAAAGCAGGCAGCATCAGGACCAGGCTCTTGAAGGACACGAAGAGAAAGACCAAGCAGGCAGAGAGGATGCTGGGAAATGCTGCCTCGCTCTCCTCCAACTCCCAGAAGAGAAGCAAAGAAGCAGAACTGATGTCCAAGGAGAATGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000059507_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.158 C2=0.642
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSRNOT00000090137fB7760
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGAAACAAGACCACAGCTGC
R:
TGGCATTCTCCTTGGACATCA
Band lengths:
299-511
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]