RnoEX0049894 @ rn6
Exon Skipping
Gene
ENSRNOG00000003595 | Lhx4
Description
LIM homeobox 4 [Source:RGD Symbol;Acc:1308044]
Coordinates
chr13:73348842-73352015:-
Coord C1 exon
chr13:73351844-73352015
Coord A exon
chr13:73351380-73351480
Coord C2 exon
chr13:73348842-73349760
Length
101 bp
Sequences
Splice sites
3' ss Seq
TGCACCTCTCCCCTTTGCAGGGA
3' ss Score
11.62
5' ss Seq
AATGTGAGT
5' ss Score
7.8
Exon sequences
Seq C1 exon
GTTTGGTTTCAGAACAGAAGGGCCAAGGAGAAAAGGCTGAAGAAGGACGCGGGGCGGCATCGTTGGGGGCAGTTCTACAAGAGCGTCAAGAGGAGCCGGGGAGGCAGCAAGCAGGAGAAGGAGAGCTCAGCAGAGGACTGTGGGGTTAGTGACAGTGAGCTGAGCTTCCGAG
Seq A exon
GGACACTGAGCTCCTCCCACGGTCCCCTAGAGTAAGCCGGTCCTCCAATCCTGGTGGAAGGAGGACATGCTCAACAGGCCTTTTCCTGGGAAATCAATAAT
Seq C2 exon
AAGATCAAATACTCTCAGAGCTTGGCCACACCAATAGGATTTATGGCAACGTGGGGGACGTTACAGGCGGACAGTTAATGAATGGGAGCTTCTCCATGGATGGGACAGGACAATCCTATCAGGACTTGAGGGATGGGAGCCCCTATGGAATCCCCCAGTCTCCATCCTCCATATCGTCCTTGCCATCCCATGCTCCTTTGCTCAGTGGGCTGGATTACACAGTGGACAGTAATCTGGGCGTCATTGCCCATCCAGGGCAGGGAGTAAGCCAGACACTGAGAGCCATGGCTGGGGGGCCCACCTCTGACCTCTCGACAGGAAGCAGTGTAGGCTACCCTGATTTTCCAACTAGCCCAGCCTCCTGGCTTGATGAAATGGACCATCCTCCTTTTTAGACCTTCCTTGCCACCTTACTTGTCCTGGCGGGAGAGAATGTCTTCAAGGATCAAAAATACGCCAATGTGAATTTCCATTATTTTCAATGGAAGGCCTCGGCCGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003595-'15-12,'15-11,16-12
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.500 A=0.909 C2=0.662
Domain overlap (PFAM):
C1:
PF0004624=Homeobox=PD(19.3=19.0)
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSRNOT00000093650fB7877
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAGGAGAGCTCAGCAGAGG
R:
AAAGGAGCATGGGATGGCAAG
Band lengths:
256-357
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]