RnoEX0050365 @ rn6
Exon Skipping
Gene
ENSRNOG00000016758 | Loxl2
Description
lysyl oxidase-like 2 [Source:RGD Symbol;Acc:1308435]
Coordinates
chr15:51335326-51339176:+
Coord C1 exon
chr15:51335326-51335548
Coord A exon
chr15:51338326-51338446
Coord C2 exon
chr15:51338993-51339176
Length
121 bp
Sequences
Splice sites
3' ss Seq
CCCTCTTTTCCCTCTCTAAGTGT
3' ss Score
8.89
5' ss Seq
CTGGTAAGG
5' ss Score
9.68
Exon sequences
Seq C1 exon
AACCTTTGCCTCAAGGAGGAAGCTGCGCTACTGGAAGTTTTCTATGAACTGCACGGGAACTGAAGCACACATCTCCAGCTGTAAGCTGGGCCCTCCCATGTTCCGGGACCCTGTGAAGAATGCCACCTGTGAGAACGGGCAGCCAGCTGTGGTCAGTTGTGTGCCTAGCCAGATCTTCAGCCCTGATGGACCCTCAAGGTTCCGGAAAGCCTATAAGCCGGAG
Seq A exon
TGTCTGGACAGGCTGCCTCTTTTGAACTGGACTTGGATGGCTGTTGGTCTCTACTAGGAAGGCTCCCTATCCCTTGCAGCTTCTGCTCTGAATCATGTCCTGATTAGATCTGTCTTTCCTG
Seq C2 exon
CAACCCTTGGTGCGACTGAGAGGTGGAGCCCAGGTCGGGGAGGGCCGCGTGGAGGTGCTCAAGAATGGAGAATGGGGTACCGTCTGCGATGACAAGTGGGACCTGGTGTCTGCCAGCGTGGTCTGCAGGGAGCTGGGCTTCGGCACAGCTAAAGAGGCTGTCACAGGCTCCAGGCTGGGGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016758_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.037 A=0.000 C2=0.016
Domain overlap (PFAM):
C1:
PF0053013=SRCR=PD(50.9=72.0)
A:
NO
C2:
PF0053013=SRCR=PU(56.7=88.7)
Main Inclusion Isoform:
ENSRNOT00000085237fB7961
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGGGAACTGAAGCACACATC
R:
CAGACGGTACCCCATTCTCCA
Band lengths:
257-378
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]