RnoEX0050716 @ rn6
Exon Skipping
Gene
ENSRNOG00000056184 | Lrp2
Description
LDL receptor related protein 2 [Source:RGD Symbol;Acc:68407]
Coordinates
chr3:55690820-55693607:-
Coord C1 exon
chr3:55693470-55693607
Coord A exon
chr3:55691444-55691558
Coord C2 exon
chr3:55690820-55690942
Length
115 bp
Sequences
Splice sites
3' ss Seq
CTTTTGCTGTGGCGAAAAAGAAA
3' ss Score
-0.56
5' ss Seq
ACGGTGTGC
5' ss Score
5.49
Exon sequences
Seq C1 exon
CTACTCGCTTTCCCAACGGCACCTACTGCCCAGCCGCCATGTTCGAATGTAAAAACCACGTGTGCATCCAGTCGTTTTGGATATGTGATGGGGAAAATGACTGTGTCGACGGTTCCGATGAGGAGATCCACCTGTGCT
Seq A exon
AAACTTGAAGAAGATAGGTTCAGGTTCCGGTCCATGATGGCAGAGGAGTCACAGGAGCAAGAGCTTGAAGTAATTGGTCGCACGATCCCGGAGCCATAAGCAGACAGCAGTGACG
Seq C2 exon
TCAACATTCCGTGTGAATCACCACAGCGATTCCGGTGTGACAACAGCCGCTGTGTTTATGGCCATCAGCTGTGCAATGGTGTGGATGACTGCGGAGATGGAAGTGACGAGAAAGAAGAGCACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000056184_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0005713=Ldl_recept_a=WD(100=83.0)
A:
NA
C2:
PF0005713=Ldl_recept_a=WD(100=92.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTTCCCAACGGCACCTACTG
R:
TCTCGTCACTTCCATCTCCGC
Band lengths:
242-357
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]