RnoEX0050839 @ rn6
Exon Skipping
Gene
ENSRNOG00000016204 | Lrrc24
Description
leucine rich repeat containing 24 [Source:RGD Symbol;Acc:1308720]
Coordinates
chr7:117783307-117784638:-
Coord C1 exon
chr7:117784524-117784638
Coord A exon
chr7:117783658-117783691
Coord C2 exon
chr7:117783307-117783554
Length
34 bp
Sequences
Splice sites
3' ss Seq
TTGTTCTTTTTTTTTCGGAGCTG
3' ss Score
-0.55
5' ss Seq
TAGGTAAGC
5' ss Score
8.89
Exon sequences
Seq C1 exon
GTTCCCGAGTTACGTTCTGTTGCATCTGGGAACCGAGGAGAGCCCAGTGAAGGCTGCCGTGACAATGAAGAGTAAAAGGATCTCAGTGTAGGCACAGGAAGAGGCCTAGGGCAAG
Seq A exon
CTGGGGACCGAACCCAGGGCCTTGCGCTTCCTAG
Seq C2 exon
GAGGCGCATCCCATCCGGGTCCATTCTCTGGGGAAGCCACAGCTTCCTGGTGGGGCTCTTCGGAAATGGCCCCAGGACCCCCCGCGCTGCTGCTGCTACTGCTGGGTTTATTGCTGCTGCCGCTGCTGCCTGGACTCCCACCCCGCGCCACCGGCTGTCCCGCCGCCTGCCGCTGCTACAGCGCCACAGTGGAGTGTGGCGCCCTACGGTTGCGCGTGGTCCCACCGGGAATCCCTCCGGGGACGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016204_MULTIEX1-2/3=1-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGCCGTGACAATGAAGAGT
R:
CGAAGAGCCCCACCAGGAAG
Band lengths:
125-159
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]