RnoEX0051056 @ rn6
Exon Skipping
Gene
ENSRNOG00000025296 | Lrrc8a
Description
leucine rich repeat containing 8 VRAC subunit A [Source:RGD Symbol;Acc:1311690]
Coordinates
chr3:8805723-8823070:+
Coord C1 exon
chr3:8805723-8805831
Coord A exon
chr3:8816973-8817085
Coord C2 exon
chr3:8820906-8823070
Length
113 bp
Sequences
Splice sites
3' ss Seq
CGGTCTCTGTTCCCTTCCAGACA
3' ss Score
10.57
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
Exon sequences
Seq C1 exon
GGCAGCAGCAGCGTCCATGGAGCAAAAGGAATGTCAGGACCCTGTGCATCCAGACGGGGACCAGCCTCAGCACCAACAGCCAACACAAAGATAGCAGAGCCATCTCAGG
Seq A exon
ACAGAAGCTAGACAGCCTGCAGGTCACTTCCTGAGAAAGACCCTACTCCCCTGTACCCTTCTCACCCTTCTGCTGCTCTTCCTTCACACTCGGGACGTCCAGGACACGGGCAG
Seq C2 exon
GTTAAACCATGATTCCGGTGACAGAGCTCCGCTACTTCGCGGACACGCAGCCAGCATACCGGATCCTGAAGCCGTGGTGGGATGTGTTCACTGACTACATCTCCATTGTCATGCTGATGATTGCTGTCTTTGGGGGGACACTGCAAGTCACCCAGGACAAGATGATCTGCCTACCTTGTAAGTGGGTCACCAAAGACTCCTGCAACGACTCCTTCCGGGGCTGGGGGGCCTCCAGCCCAGAGCCCACTTACCCCAACTCCACAGTCCTGCCTACTCCTGACACGGGCCCCACAGGTATCAAGTATGACCTAGATCGCCACCAGTACAACTACGTGGATGCCGTGTGTTACGAGAACCGCCTGCATTGGTTTGCCAAGTACTTCCCCTACCTCGTGCTCCTGCACACCCTCATCTTCCTGGCCTGCAGCAACTTCTGGTTCAAGTTCCCACGCACCAGCTCGAAGCTGGAGCACTTCGTGTCTATCCTGCTCAAGTGCTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025296_MULTIEX1-2/3=C1-C2
Average complexity
ME(1-2[94=100])
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.013
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF125343=DUF3733=WD(100=9.0),PF125343=DUF3733=WD(100=8.3),PF127992=LRR_4=WD(100=5.8),PF138551=LRR_8=WD(100=8.5),PF127992=LRR_4=WD(100=6.7),PF138551=LRR_8=PU(18.6=1.5)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACCAACAGCCAACACAAAG
R:
AGGAGTCGTTGCAGGAGTCTT
Band lengths:
253-366
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]