RnoEX0051379 @ rn6
Exon Skipping
Gene
ENSRNOG00000012094 | Ltbp2
Description
latent transforming growth factor beta binding protein 2 [Source:RGD Symbol;Acc:68380]
Coordinates
chr6:108502875-108504460:-
Coord C1 exon
chr6:108504377-108504460
Coord A exon
chr6:108503238-108503366
Coord C2 exon
chr6:108502875-108503012
Length
129 bp
Sequences
Splice sites
3' ss Seq
CTCATTCTGCCCTCCCGCAGATG
3' ss Score
12.03
5' ss Seq
AGGGTGAGG
5' ss Score
7.13
Exon sequences
Seq C1 exon
TTGAATTCAGTGAGCTGTGCCCCAGTGGTCAAGGTTACATCCCAGTGGAAGGGGCCTGGACATTTGGACAAGCCATGTATACAG
Seq A exon
ATGCCGACGAGTGCATACTGTTTGGGCCTGCTCTCTGCCAGAATGGCCGATGCCTCAACACAGTGCCTGGCTACATTTGCCTGTGCAACCCTGGCTACCACTATGATGCCGTCAGCAGGAAGTGCCAGG
Seq C2 exon
ATCACAACGAATGCCAGGACTTGGCCTGTGAGAACGGCGAGTGTGTGAACACAGAAGGCTCCTTCCACTGCTTCTGCAGTCCCCCCCTCATCCTAGACCTCAGCGGACAGCGCTGTGTGAACAGTACCAGCAGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012094_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0068312=TB=PD(12.2=17.2),PF0764510=EGF_CA=PU(0.1=0.0)
A:
PF0764510=EGF_CA=WD(100=95.5),PF0764510=EGF_CA=PU(0.1=0.0)
C2:
PF0764510=EGF_CA=WD(100=83.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAATTCAGTGAGCTGTGCCC
R:
AGCTGCTGGTACTGTTCACAC
Band lengths:
218-347
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]