RnoEX0051383 @ rn6
Exon Skipping
Gene
ENSRNOG00000020813 | Ltbp3
Description
latent transforming growth factor beta binding protein 3 [Source:RGD Symbol;Acc:62057]
Coordinates
chr1:221108390-221109000:+
Coord C1 exon
chr1:221108390-221108515
Coord A exon
chr1:221108645-221108748
Coord C2 exon
chr1:221108872-221109000
Length
104 bp
Sequences
Splice sites
3' ss Seq
TCACCTACTGATCCTTCCAGATG
3' ss Score
7.94
5' ss Seq
CACGTGGGT
5' ss Score
4.46
Exon sequences
Seq C1 exon
AGACCGATGAGTGCCGATTGAACCAGAACATCTGTGGCCATGGACAGTGTGTGCCTGGCCCCTCGGATTACTCCTGCCACTGCAACCCGGGCTACCGGTCACATCCACAGCACCGATATTGTGTTG
Seq A exon
ATGTGAACGAGTGTGAGGCAGAGCCCTGCGGTCCCGGGAGAGGCATCTGCATGAACACTGGTGGCTCCTATAATTGTCACTGCAACCGAGGCTACCGCCTCCAC
Seq C2 exon
ACCTAAACGAGTGCGCCAAGCCTCATCTGTGTGGTGACGGTGGCTTCTGCATCAACTTTCCTGGTCACTACAAATGCAACTGCTATCCTGGCTACCGGCTCAAGACCTCACGACCACCCGTTTGCGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020813-'14-24,'14-23,15-24
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.023 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF146701=FXa_inhibition=WD(100=86.0),PF0764510=EGF_CA=PU(0.1=0.0)
A:
PF0764510=EGF_CA=WD(100=95.6),PF0764510=EGF_CA=PU(0.1=0.0)
C2:
PF0764510=EGF_CA=WD(100=95.5),PF0764510=EGF_CA=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCGATGAGTGCCGATTGAAC
R:
GGGTGGTCGTGAGGTCTTGAG
Band lengths:
243-347
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]