RnoEX0051591 @ rn6
Exon Skipping
Gene
ENSRNOG00000004614 | Lypd6b
Description
LY6/PLAUR domain containing 6B [Source:RGD Symbol;Acc:1562767]
Coordinates
chr3:35386212-35417681:+
Coord C1 exon
chr3:35386212-35386283
Coord A exon
chr3:35409799-35409982
Coord C2 exon
chr3:35417622-35417681
Length
184 bp
Sequences
Splice sites
3' ss Seq
TCTCTCTCTTGACTCACTAGCTG
3' ss Score
6.61
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
ACTGGCTACTTCGTTTGATGCAGACCTGTTCCCTGCGGCTTAGAGACTGACTACCAGGCTGTCTTTCTTAAG
Seq A exon
CTGTGTAACCTTGGGCAAGTTGCTATCCTCTCTCTGAACTTCAGACTCCTCCTGTGTGAATTGGGGATAATAATAGCTCCCACCTGGCTGTGCTGTGACGATTACATGATTCATTGCGTCGGGCGTCTGACTCTTACAAAGCCTCAATGAATGCTAACTTAAAATGGAAGTTACTCTACATGAG
Seq C2 exon
GTGTGCTTGAATGAGAGAAGCAAGGAATAGAAGAAGAGGAGGAAGACTTGGGTGAGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004614_MULTIEX1-1/5=C1-2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGGCTACTTCGTTTGATGCA
R:
TCCTCACCCAAGTCTTCCTCC
Band lengths:
130-314
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]