RnoEX0051595 @ rn6
Exon Skipping
Gene
ENSRNOG00000004614 | Lypd6b
Description
LY6/PLAUR domain containing 6B [Source:RGD Symbol;Acc:1562767]
Coordinates
chr3:35424766-35428308:+
Coord C1 exon
chr3:35424766-35424862
Coord A exon
chr3:35426119-35426217
Coord C2 exon
chr3:35428063-35428308
Length
99 bp
Sequences
Splice sites
3' ss Seq
CTCCGCTTCTGTCTTCACAGCCA
3' ss Score
9.1
5' ss Seq
AAGGTCCTG
5' ss Score
-0.19
Exon sequences
Seq C1 exon
GAACAACAAACAAGACAAGGGATTTGGGAATGTCTCAACAGACACAAAACATTTGCGGTTTTGTTCAACTTGATTTTCCTGGATCCGGATCTTTATG
Seq A exon
CCACAAAGTCCTGGATACCCCACTTCAGAACTGCTATGTGTTATGACTGTACTACAGAGGAGGAAGTTGAGCTTGGGAAGATACAGAAGCTCATCTAAG
Seq C2 exon
GTGGAATAATTGACCTTTCCGTGCAGAAGCAGAACATACCTCTTGTTGACGTCTAAAACCAAATGAGCTGACCCAGTCCGTGTTTTCATGGCAGACACACGACTTTGACCTGCCCAGTCAAGGAGTTCAGAATGCTGCTCCTCTGCCACATTCTAGCCGTGACCATCCTTCAGATCTTGGTCATCTCAGAAAACTGGGTGTTTGCTAAGAACATCAACTTCTACAATGTGAGGCCCCCTCTCGACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004614_MULTIEX1-5/5=4-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGACACAAAACATTTGCGGT
R:
GTCAAAGTCGTGTGTCTGCCA
Band lengths:
169-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]