RnoEX0051764 @ rn6
Exon Skipping
Gene
ENSRNOG00000016047 | Macf1
Description
microtubule-actin crosslinking factor 1 [Source:RGD Symbol;Acc:1306057]
Coordinates
chr5:141195693-141215155:-
Coord C1 exon
chr5:141215063-141215155
Coord A exon
chr5:141205911-141206052
Coord C2 exon
chr5:141195693-141195859
Length
142 bp
Sequences
Splice sites
3' ss Seq
CAGAGTGATTTATCTTTCAGTGG
3' ss Score
5.06
5' ss Seq
GAGGCAAGC
5' ss Score
2.09
Exon sequences
Seq C1 exon
GTGAAGCTAGTGAACATCCGCAATGATGACATCACGGACGGCAATCCCAAGCTCACCCTGGGCCTCATCTGGACCATCATCTTGCACTTCCAG
Seq A exon
TGGCATCACTATGAGCATTTTGCCATCCTCCTCTGGCTATGGCAGCGATGGGCTGCGCCTACATGGGGTCCGGCCTGAATATACAGAACCCGAAAAGACCTCCACGCCCTTCTCAGAAGAGGATGGTACCCTGTCTTTGGAG
Seq C2 exon
ATCTCTGACATCTATATTAGTGGGGAGTCAGGGGATATGTCAGCCAAAGAGAAGCTACTCTTGTGGACTCAGAAAGTAACAGCTGGTTACACAGGAATCAAGTGCACCAACTTTTCTTCCTGCTGGAGCGATGGGAAAATGTTCAATGCATTGATTCACCGATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016047_CASSETTE10
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0030726=CH=FE(29.7=100)
A:
NO
C2:
PF0030726=CH=PU(39.2=71.4)
Main Inclusion Isoform:
ENSRNOT00000084109fB8241
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGAAGCTAGTGAACATCCGCA
R:
TGCATTGAACATTTTCCCATCGC
Band lengths:
243-385
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]